genewise output
Score 220.88 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Sps2.Perkinsus_   71 FLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMSPLE 
                     F  P+  DP+ QG IA AN LSDLY+ G +D +N+LM+L  S  M+  + 
                     FFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQ 
gi|93569092|gb|20000 tttctgggcttcgaagtgagttgctttgaggtgaatattgttagaaggc 
                     tttcttaacatagatcgcattcatactgtaagaatttttcgccatccaa 
                     ctcgatttatcatatatcttaatttatttattttgagaaatattgaaaa 


Sps2.Perkinsus_  120 QTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQL 
                     +  ++K MI+GFN     AG+KV+GGQTV NPWP++GG A + +  ++  
                     RQWSSKLMIQGFNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEF 
gi|93569092|gb|20147 actttataacgtagcgatggaagaggcagaactcagggggatataaagt 
                     gagccatttagtaaactgcggatgggactaacgcttggtcccttacaat 
                     aagagaggaaacttgatcattattttacagtaggattttatctagccat 


Sps2.Perkinsus_  169 VTTDRAVPGNVIVLTKPLGTQVTGNLALWMMNEAQWGKVVKAGLDVETC 
                     +    AVPG+V+VLTKPLGTQV  N   W+    +W K+     + E C 
                     IKPVNAVPGDVLVLTKPLGTQVCVNFHQWLSKPERWEKI-NTITNAEEC 
gi|93569092|gb|20294 aacgaggcgggtgtaaccgacgtgatcctttacgctgaa aaaaagggt 
                     tactactcgattttcactgcatgtataagtcacaggaat actcacaag 
                     agagttcctcaaaacgtacaattacttagataaatgagc catataaat 


Sps2.Perkinsus_  218 TRAVKMGDLSMMTLNKNGCRLMREFGALGATDVTGFGLVGHADNLARVQ 
                      +      LSM  LN+ G RLM+++ A  ATDVTGFG++GH+ NLA+ Q 
                     EQVFNYATLSMARLNRVGARLMKKYNAHAATDVTGFGILGHSTNLAQNQ 
gi|93569092|gb|20438 gcgtatgactagataagggacaaatagcggaggagtgatgctaatgcac 
                     aattaacctctcgtagtgcgttaaaacacccatcgtgttgaccatcaaa 
                     aaacctaagagaagtgacaaagagttttccctcttctagttattgtata 


Sps2.Perkinsus_  267 KSGASIEIDTVPTIQGCKTLSMVRPNGRDYGLLEGRAAETSGGLLVMLR 
                          +EI T+P I+  K L         + LL+G +AETSGGLL+ +  
                     LLPIRFEIHTLPIIKHMKKLE--DHLNHPFKLLKGTSAETSGGLLISM- 
gi|93569092|gb|20585 ctcactgacatcaaacaaatg  gctacctattagatggatggttata  
                     ttctgtatactcttaataata  aataactattagcccaccggtttct  
                     caatttattaaactatgagga  ttattacaaaattatattttaatag  


Sps2.Perkinsus_  316 DKETAEKF                                          
                      +E AE F                                          
                     SRENAEAF                                          
gi|93569092|gb|20723 tcgagggt                                          
                     cgaacact                                          
                     tcattatt                                          


//
>gi|93569092|gb|CM000152.2|:subseq(5721658,50000).pep
FFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQRQWSSKLMIQG
FNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEFIKPVNAVPGDVLVLTKPLGTQV
CVNFHQWLSKPERWEKINTITNAEECEQVFNYATLSMARLNRVGARLMKKYNAHAATDVT
GFGILGHSTNLAQNQLLPIRFEIHTLPIIKHMKKLEDHLNHPFKLLKGTSAETSGGLLIS
MSRENAEAF
//
>gi|93569092|gb|CM000152.2|:subseq(5721658,50000).[20000:20746].sp
TTCTTTTTCCCGTTAGTTGATGATCCATATTTCCAAGGTAAAATTGCATGTGCCAATGTT
TTATCAGATCTTTATTCATTTGGTATTGAAGATTGTGATAATATGTTAATGTTATTAGCA
TGTTCAACTGATATGACAGCAGAACAAAGACAATGGTCATCGAAATTGATGATACAAGGA
TTCAATGATCAGGCAATTTGCGCAGGTAGTAAAGTTAGTGGTGGTCAAACCGTAAAGAAT
CCATGGCCGATAGTTGGTGGTGTTGCAACTTCCATTTTAAAGACCAACGAATTTATAAAG
CCAGTGAATGCTGTCCCCGGTGACGTATTAGTATTAACCAAGCCTCTAGGCACACAAGTT
TGTGTAAACTTTCATCAATGGTTATCTAAACCAGAACGTTGGGAAAAGATCAACACAATT
ACAAATGCAGAAGAATGTGAACAAGTATTCAACTATGCAACACTGTCAATGGCAAGATTG
AATAGGGTAGGCGCAAGACTAATGAAAAAGTATAATGCTCATGCCGCCACCGATGTCACT
GGTTTCGGTATATTGGGTCATTCAACTAATTTGGCTCAAAATCAACTCTTACCAATTCGT
TTTGAAATTCATACATTACCAATCATTAAACATATGAAAAAGTTGGAAGATCATTTAAAT
CATCCATTCAAATTATTAAAAGGTACTTCAGCTGAAACTTCTGGTGGTTTATTAATTTCA
ATGTCTCGCGAAAATGCTGAAGCTTTT
//
gi|93569092|gb|CM000152.2|:subseq(5721658,50000)	GeneWise	match	20000	20746	221.88	+	.	gi|93569092|gb|CM000152.2|:subseq(5721658,50000)-genewise-prediction-1
gi|93569092|gb|CM000152.2|:subseq(5721658,50000)	GeneWise	cds	20000	20746	0.00	+	0	gi|93569092|gb|CM000152.2|:subseq(5721658,50000)-genewise-prediction-1
//