genewise output
Score 242.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Sps2.Perkinsus_    2 WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDS 
                     +DP SLGL  +F LT ++  KG  CK+   +L ++L  +       +   
                     FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSPGQKDVG 
Cf_Contig765:su20000 tgcgtcgccggtccagtaccagtatatcccaccgcccgggatcgcaggg 
                     tactctgtccatatcaacgtaggggatcacattcttactccccgaaatg 
                     ccccgccgaagcgccccgtgaccccggggggggggggcccaactggccc 


Sps2.Perkinsus_   51 PDCSMVPV----GDGERV-LVSSTDFLSPISQDPFHQGWIAAANTLSDL 
                      DCS+VP+    G GE + LVS+TDF  P   DPF QG I AAN LSDL 
                     MDCSIVPLHHTNGKGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDL 
Cf_Contig765:su20147 agtaagccccaagagggctcgtaagtttcagggctccgcagggagctgc 
                     taggttctaacagagacttttcccatttcgtcacttagatgccattcat 
                     gcctccggcccccgcgccttccccccccccgccgtgatctcggcgggcc 


Sps2.Perkinsus_   95 YAVGADDINNILMILTVSMKMSPLEQTVTTKKMIEGFNACCEEAGTKVT 
                     Y++G    + +LM+L  S  M   E+ VTT++++ GF      A T VT 
                     YSMGIAHCDTMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVT 
Cf_Contig765:su20294 taagagctgaacaccggaagaggggccgaacgaaagtggcgccggatga 
                     agtgtcagactttttccgcataaaagttccgattggtcagcgtcccctc 
                     ccgccccccggcggccccccgcacgtccagggtggctcgcgtccacggt 


Sps2.Perkinsus_  144 GGQTVFNPWPLLGGCAMATMLQSQLVTTDRAV-PGNVIVLTKPLGTQVT 
                     GGQTV+NPWPL+GG AMA + ++++V     +  G+V+VLTKPLG Q+  
                     GGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIA 
Cf_Contig765:su20441 ggcagaactccaggggagggtgggagccggcccggggcgcaaccgtcag 
                     ggacttacgcttggtctcttcacattgccgttgcgattttcactggatc 
                     ccgccgcggaccctcgggccggtgggtgtgggtggtgggggggtgcacg 


Sps2.Perkinsus_  192 GNLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKNGCRLM 
                      NL  W+M  +  +  V++  +  +           SM  LN+ G RLM 
                     MNLKQWLMRPSPLYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLM 
Cf_Contig765:su20588 aacactcacctcctgggaggcatcggaggctaagagaacccacgggcca 
                     tataagttgccctaaattagatcgaataataaaccagtggtagagcgtt 
                     gccgggcggcgcccgcccggcccccacgggccgctccgtcacgacagcg 


Sps2.Perkinsus_  240 REFGALGATDVTGFGLVGHADNLARVQKSGAS-----IEIDTVPTIQGC 
                      + GA GATDVTGFG++GHA+N    Q  G++     + +D +P ++   
                     LKHGAHGATDVTGFGILGHANNFGAAQAVGSAPQSLCLVLDRLPMLKTA 
Cf_Contig765:su20735 cacggcggaggagtgacgcgaatgggcgggagcctctcgcgctcacaag 
                     taagcagccatcgtgttgacaatgccactggccactgtttagtcttacc 
                     ggccgctccctgctctcccccctattgaactaggggtcggtcgagcgac 


Sps2.Perkinsus_  284 KTLSMVRPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKF          
                        S +  +   Y L EG +AETSGGLLV L  +E AE F          
                     VAASRLMQD--KYRLFEGYSAETSGGLLVALASREAAEAF          
Cf_Contig765:su20882 gggtccacg  atcctggttggaaggccggtgacgggggt          
                     tcccgttaa  aagttagaccacgggtttctcggaccact          
                     cggagcggc  gccccgccgcggctggccgggtcgcaagc          


//
>Cf_Contig765:subseq(81625,50000).pep
FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSPGQKDVGMDCSIVPLHHT
NGKGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMD
EDERLVTTREIMRGFAERARLAATSVTGGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLR
AGDVLVLTKPLGCQIAMNLKQWLMRPSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE
GARLMLKHGAHGATDVTGFGILGHANNFGAAQAVGSAPQSLCLVLDRLPMLKTAVAASRL
MQDKYRLFEGYSAETSGGLLVALASREAAEAF
//
>Cf_Contig765:subseq(81625,50000).[20000:20995].sp
TTCGACCCCGTCTCGCTCGGCCTGCCAGCAGAGTTCCAGCTCACCGACTACACGCGTCTG
AAAGGCTGCAGCTGCAAGTTGCCGCAGCCGAAGCTGCTGGCGCTGCTGCAGGCCGTCGCC
ACATCACCCGGTCAGAAGGACGTCGGCATGGACTGCAGTATCGTCCCGCTGCACCACACC
AACGGCAAGGGCGAGGCCCTCTTTCTTGTCTCCACCACCGACTTCTTCTTCCCCAGCGTG
GCCGACCCGTTTCTGCAAGGTCACATTGGCGCGGCGAACGTGCTGTCGGACCTCTACAGC
ATGGGCATCGCCCACTGCGACACGATGCTCATGCTGCTCGCCGCCAGCACCGACATGGAC
GAAGACGAGCGTCTCGTCACAACGCGGGAGATTATGAGGGGCTTTGCCGAGCGCGCGCGT
CTCGCCGCAACCTCGGTGACTGGCGGCCAGACCGTCATGAACCCGTGGCCACTCATCGGC
GGTGTCGCGATGGCGGTCGTCTCGGAGGCTGAGATGGTGCGTCCGGCTGGGCTGCTGCGT
GCGGGGGATGTGCTGGTGCTGACGAAGCCGCTTGGGTGCCAAATCGCGATGAACCTCAAG
CAGTGGCTCATGCGGCCCTCGCCCCTCTACGAGGACGTCATCGAGGGGCACATCTCCCGC
GACGAAATCGAGGAGCTGTACAACAAGGCCACTGACAGCATGCGTCGCCTAAACCGGGAA
GGCGCACGGCTCATGCTGAAGCACGGCGCGCACGGTGCCACCGACGTTACGGGCTTTGGC
ATTCTCGGCCACGCCAACAACTTTGGAGCTGCTCAGGCAGTAGGCAGTGCACCGCAGTCG
CTGTGTCTCGTGCTGGATCGCTTGCCAATGCTCAAGACAGCCGTCGCGGCGTCACGGCTC
ATGCAGGACAAGTACCGCCTCTTCGAGGGCTACTCGGCCGAGACGAGCGGTGGGCTGCTC
GTCGCGTTGGCGAGTCGCGAGGCCGCAGAAGCGTTC
//
Cf_Contig765:subseq(81625,50000)	GeneWise	match	20000	20995	250.80	+	.	Cf_Contig765:subseq(81625,50000)-genewise-prediction-1
Cf_Contig765:subseq(81625,50000)	GeneWise	cds	20000	20995	0.00	+	0	Cf_Contig765:subseq(81625,50000)-genewise-prediction-1
//