Command line: [exonerate -m p2g --exhaustive yes --showtargetgff -q ./query/EhSEP2.fa -t ./EhSEP2.fa/P.capsici/fastasubseq/EhSEP2.fa.P.capsici.genome.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU  RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags: Precursor # QUERY
        Target: PHYCAscaffold_105:subseq(58000,21000) [revcomp]
         Model: protein2genome:local
     Raw score: 241
   Query range: 21 -> 132
  Target range: 11268 -> 10941

    22 : LeuThrProAspAsnPheAspGluLeuValLeuLysSerGlyLysAlaAlaPheIleLys :    41
         ||||||||||||||||||||||||   |||:!! ! .!!..!|||  !!.!.!.:!!|||
         LeuThrProAspAsnPheAspGlu---ValValAspGlySerLysHisValLeuValLys
 11268 : CTGACGCCTGACAACTTCGATGAG---GTCGTGGATGGCTCCAAACACGTGCTGGTCAAG : 11214

    42 : PheLeuAlaProTrpUnkGlyHisCysLysLysMetLysProAspTrpAspSerLeuAla :    61
         |||!!!|||||||||   ||||||||||||!..|||   |||   !::!!:!!!:!!|||
         PhePheAlaProTrpCysGlyHisCysLysSerMetAlaProThrTyrGluThrValAla
 11213 : TTCTTCGCGCCTTGGTGCGGTCACTGCAAGAGCATGGCCCCTACGTACGAGACTGTGGCT : 11154

    62 : SerThrPheGluAspSerLysLysValLeuIleAlaAspValAspCysThrThrGlyGly :    81
         !!!.!!|||:!! ! !!!!..!!.|||:!!:!:|||!!:||||||   .!!  !..!  !
         ThrAlaPheLysLysThrSerAsnValValValAlaGluValAsp---AlaAspAsnTyr
 11153 : ACAGCCTTCAAGAAGACGAGCAACGTGGTGGTGGCTGAGGTGGAC---GCTGACAACTAC : 11097

    82 : LysProLeuCysGluLysTyrGlyValArgGlyTyrProThrIleLysTyrPheAsnPro :   101
         |||  !||| !!...|||!:!||||||! !|||!:!||||||:!!|||||||||  !  !
         LysAspLeuGlySerLysPheGlyValThrGlyPheProThrLeuLysTyrPheProGlu
 11096 : AAGGACTTGGGCTCCAAGTTCGGCGTTACGGGCTTCCCCACTCTTAAATACTTCCCTGAG : 11037

   102 : ProAspGluGluGlyGluAspTyrLysGlyGlyArgSerLeuAspGluLeuLysLysPhe :   121
           !..!   |||  !|||||||||||||||||||||.!!  !|||!!:!!!   !!.|||
         GlySerThrGluProGluAspTyrLysGlyGlyArgGlyGluAspAspPheValAsnPhe
 11036 : GGATCCACTGAACCGGAGGACTACAAGGGCGGCCGTGGAGAGGACGACTTTGTCAACTTC : 10977

   122 : AlaGluAsnGluLeuGlyProGlyCysSerVal :   132
           !.!..!.:!!  !||| !!..!    !!|||
         LeuAsnGluLysAlaGlySerAsnValArgVal
 10976 : CTGAACGAGAAAGCCGGCTCTAATGTGCGTGTG : 10942

vulgar: EhSep2_emiliania_huxley; 21 132 . PHYCAscaffold_105:subseq(58000,21000) 11268 10941 - 241 M 8 24 G 1 0 M 46 138 G 1 0 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	gene	10942	11268	241	-	.	gene_id 1 ; sequence EhSep2_emiliania_huxley; ; gene_orientation .
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	cds	10942	11268	.	-	.	
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	exon	10942	11268	.	-	.	insertions 0 ; deletions 2
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	similarity	10942	11268	241	-	.	alignment_id 1 ; Query EhSep2_emiliania_huxley; ; Align 11269 22 24 ; Align 11245 31 138 ; Align 11107 78 165
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU  RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags: Precursor # QUERY
        Target: PHYCAscaffold_105:subseq(58000,21000) [revcomp]
         Model: protein2genome:local
     Raw score: 222
   Query range: 11 -> 149
  Target range: 10944 -> 736

    12 : AlaAlaGlyAlaSerAlaGlyAlaIleGluLeuThrProAspAsnPheAspGluLeuVal :    31
         !.!|||  !||| !!::!  !!.!  !!  ||||||  !...:!!||||||!    !|||
         ValAlaLysAlaProSerHisValAlaAlaLeuThrGluSerAspPheAspAlaGluVal
 10944 : GTGGCGAAGGCCCCCAGCCACGTGGCTGCTCTTACGGAGTCAGACTTCGATGCTGAAGTG : 10887

    32 : LeuLysSerGlyLysAlaAlaPheIleLysPheLeuAlaProTrpUnkGlyHisCysLys :    51
         :!!:!!|||  !|||  !|||.!!:!!:!!|||! !|||||||||   ||||||||||||
         IleGlnSerLysLysHisAlaIleValGluPheTyrAlaProTrpCysGlyHisCysLys
 10886 : ATCCAGTCCAAGAAACACGCAATTGTCGAGTTCTACGCCCCGTGGTGCGGACACTGCAAG : 10827

    52 : LysMetLysProAspTrpAspSerLeuAlaSerThrPheGluAspSerLysLysValLeu :    71
         !..:!!   |||  !!::!!:..!:!!!.!:!!! !|||!!:!  ..!:!!!!.||||||
         SerLeuAlaProThrTyrGluGluValGlyAlaIlePheAspGlyGluGluAsnValLeu
 10826 : AGTTTGGCCCCAACTTACGAGGAGGTGGGAGCGATTTTCGACGGAGAGGAGAACGTGCTC : 10767

    72 : IleAlaAspValAspCysThrThrGlyGlyLysProLeuCysGluLysTyrGlyValArg :    91
         |||||| ! ||||||...|||.!!..!  !:!!   |||..!...:::|||..!|||!:!
         IleAlaLysValAspAlaThrAlaAsnThrGlu---LeuAlaSerArgTyrAsnValLys
 10766 : ATTGCCAAGGTGGACGCAACTGCCAACACGGAG---CTGGCCAGCCGCTACAATGTCAAG : 10710

    92 : GlyTyrProThrIleLysTyrPheAsnProProAspGluGluGlyGluAspTyrLysGly :   111
         ||||||||||||:!:   ||||||  !|||  !...!!:|||  !|||||||||..!..!
         GlyTyrProThrLeuPheTyrPheAlaProGlySerAspGluProGluAspTyrSerAsn
 10709 : GGATACCCGACTCTGTTCTACTTCGCCCCTGGCTCGGACGAGCCTGAGGACTACTCGAAC : 10650

   112 : GlyArgSerLeuAsp{G}  >>>> Target Intron 1 >>>>  {lu}LeuLysLys :   120
         ||||||..!  !  !{.}           1456 bp           {..}:!!!!.   
         GlyArgAspArgPro{A}++                         ++{rg}ValAsnGly
 10649 : GGCCGTGACAGGCCT{C}gt.........................ag{GT}GTCAATGGT :  9167

   121 : PheAlaGluAsnGluLeuGlyPro{G}  >>>> Target Intron 2 >>>>  {ly} :   129
           !|||:!!|||..!!!!||||||{|}           8341 bp           {||}
         HisAlaGlnAsnArgPheGlyPro{G}++                         ++{ly}
  9166 : CATGCGCAGAATAGGTTTGGCCCA{G}gt.........................ag{GA} :   798

   130 : CysSerValAspLeuMetAspAsnCysSerGluGluGlnLysGlyLysLeuLysGluTyr :   149
          !!!:!:!!...|||   |||:!!  !.!!|||.!.     !|||::!! !:!!|||:!!
         ArgAsnIleSerLeuGluAspHisValGlyGluHisValValGlyArgArgGluGluHis
   797 : CGTAACATTTCACTCGAAGATCATGTCGGAGAACACGTCGTGGGACGGCGAGAAGAGCAT :   739

vulgar: EhSep2_emiliania_huxley; 11 149 . PHYCAscaffold_105:subseq(58000,21000) 10944 736 - 222 M 71 213 G 1 0 M 33 99 S 0 1 5 0 2 I 0 1452 3 0 2 S 1 2 M 11 33 S 0 1 5 0 2 I 0 8337 3 0 2 S 1 2 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	gene	737	10944	222	-	.	gene_id 2 ; sequence EhSep2_emiliania_huxley; ; gene_orientation +
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	cds	10632	10944	.	-	.	
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	exon	10632	10944	.	-	.	insertions 0 ; deletions 1
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	splice5	10630	10631	.	-	.	intron_id 1 ; splice_site "GT"
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	intron	9176	10631	.	-	.	intron_id 1
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	splice3	9176	9177	.	-	.	intron_id 0 ; splice_site "AG"
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	cds	9140	9175	.	-	.	
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	exon	9140	9175	.	-	.	insertions 0 ; deletions 0
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	splice5	9138	9139	.	-	.	intron_id 2 ; splice_site "GT"
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	intron	799	9139	.	-	.	intron_id 2
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	splice3	799	800	.	-	.	intron_id 1 ; splice_site "AG"
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	cds	737	798	.	-	.	
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	exon	737	798	.	-	.	insertions 0 ; deletions 0
PHYCAscaffold_105:subseq(58000,21000)	exonerate:protein2genome:local	similarity	737	10944	222	-	.	alignment_id 2 ; Query EhSep2_emiliania_huxley; ; Align 10945 12 213 ; Align 10732 84 99 ; Align 9174 118 33 ; Align 797 130 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
