T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:4 sec.
SCORE=93
*
BAD AVG GOOD
*
Cf_Contig765_su : 95
gi|93569092|gb| : 95
gi|328864870|gb : 93
scaffold_21_sub : 92
gi|340501239|gb : 87
contig_36_subse : 95
Lt_contig6185_s : 95
PHYCAscaffold_4 : 94
supercont1.927_ : 93
TcIL3000_10_v2. : 94
SPS2.DROSO.gi|2 : 92
cons : 93
Cf_Contig765_su -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSPG
gi|93569092|gb| ---------------------------------------------
gi|328864870|gb -------------------------------------------EG
scaffold_21_sub -FDPTSVGLPEGWSLTDFSDLKG-ACKIPQNELQDMLSSLALGDG
gi|340501239|gb LWNPTDHNLEKTFVLTDYSDLKG-GCKVPQADLKKYLEKLGNAKI
contig_36_subse -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTPG
Lt_contig6185_s -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATPG
PHYCAscaffold_4 -FDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLANDLK
supercont1.927_ -WDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESIGS---
TcIL3000_10_v2. -FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPG
SPS2.DROSO.gi|2 MFQPEKHGLEPDFQLTKFTTHTGXSCKIPQKVLEKYLRGTEIENK
cons
Cf_Contig765_su QK------DVGMDCSIVPLHH-----TNGKGEALFLVSTTDFFFP
gi|93569092|gb| ---------------------------------FIIFLKKKFFFP
gi|328864870|gb IG----S-GIGFDCSVVPTKF----------NDIVMVSTTDFFFP
scaffold_21_sub NNLGTADGRIALDCSIRETR-----------QGHYVISTTDFFFP
gi|340501239|gb TS-------EAPDVSVRPVRN---------TKTKKLISTIDFFYP
contig_36_subse QK------DVGMDCSIVPLHH-----TNSKGEALFLVSTTDFFFP
Lt_contig6185_s QK------DVGVDCSIVPLQR-----TNSKGEALFLVSTTDFFFP
PHYCAscaffold_4 PN----E-TPGMDSSVVKISH---------GTDLYLVSTTDFFFP
supercont1.927_ -G------DIRMDCSILDTSIPGMYLLNVCQPGVVMVSTTDFFYP
TcIL3000_10_v2. QK------DAGMDCSIVKLQH-----KDESGNQLYMVSTTDFFFP
SPS2.DROSO.gi|2 NNDGYLI-GSGMDCAVIPLKR---------HKDYLLIQTVDFFYP
cons :. . .**:*
Cf_Contig765_su SVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDE
gi|93569092|gb| LVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQ
gi|328864870|gb NCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQ
scaffold_21_sub LVDSPYLQGRIGAANVLSDLYAEGVQHCDFVLMLLAASLDMTPQD
gi|340501239|gb LVEDPYM-GRIACCNVLSDLFSMGVTDIDTVLMVLAVSNKMNAQK
contig_36_subse SVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHE
Lt_contig6185_s SVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHE
PHYCAscaffold_4 SVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQ
supercont1.927_ LVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASY
TcIL3000_10_v2. SVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMDKTE
SPS2.DROSO.gi|2 MVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFSEKE
cons .* *:*. .***** :: * * : *::. . .:
Cf_Contig765_su RLVTTREIMRGFAER---ARLAAT---SVTGGQTVMNPWPLIGGV
gi|93569092|gb| RQWSSKLMIQGFNDQ---AICAGS---KVSGGQTVKNPWPIVGGV
gi|328864870|gb RTWSTRGMINGFNDSLDNAKIAGT---NITGGQTVKNPWPIIGGV
scaffold_21_sub RTICTNLMVRGFRDA---CTEAET---TITGGQTVLNPWAIIGGV
gi|340501239|gb EVIY-IYIYKYFE--------------------------------
contig_36_subse RLITTREIMKGFAER---ARLATT---TVTGGQTVMNPWPLIGGV
Lt_contig6185_s RLITTREIMKGFAER---AHLATT---TVTGGQTVMNPWPLIGGV
PHYCAscaffold_4 RDVVTTQMIRGFNDL---ARQAHT---NVTGGQTVMNPWPIVGGV
supercont1.927_ RTIVTVEMVRGFNDW---CKKAGTKLLKVTGGQSVMNPWPILGGV
TcIL3000_10_v2. RDICTREMMKGFVDH---VRLAGS---DVTGGQTVMNPWPLIGGI
SPS2.DROSO.gi|2 RDVVIGLVMKGFQNS---LKANGYRNTPLIIRQLKINPWCIIGGI
cons . : . *
Cf_Contig765_su AMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMR-P
gi|93569092|gb| ATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCVNFHQWLSK-P
gi|328864870|gb ATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCANAHQWLQGFP
scaffold_21_sub ATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAVNVHEWRKR-H
gi|340501239|gb ---------------------------------------------
contig_36_subse AMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLLR-P
Lt_contig6185_s AMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLR-P
PHYCAscaffold_4 AMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAVNLFQWKKK-P
supercont1.927_ AQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAVNLHQWLDQ-P
TcIL3000_10_v2. AMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAVNLKQWIHR-P
SPS2.DROSO.gi|2 ATSVCRSEEIILPSNA-QPGDVLVLTKPLGGQMAMDAHLWQLNQ-
cons
Cf_Contig765_su SPLYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLMLKHGAH
gi|93569092|gb| E--RWEKINTITNAEECEQVFNYATLSMARLNRVGARLMKKYNAH
gi|328864870|gb E--KWERITGVVTREQIIECWAYAVNSMARLNRTGARMMMKHGAH
scaffold_21_sub E--KKAKNGDTTGDKNWKIMMHAAVRSMSKLNRFGSKLMTKHNAH
gi|340501239|gb --------------------------------YFAKFLMKKYKAN
contig_36_subse SPLYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAH
Lt_contig6185_s SPLYEDAIKGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAH
PHYCAscaffold_4 E--RWQRVESIVTPEDADVAFQMASESMSRLNLNAAKMMHKYGAH
supercont1.927_ K--WWDQVKHVIDAETVIRAYNVASASMKRLNMVGAQLMHKHNAR
TcIL3000_10_v2. SPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREAARLMCVHKAH
SPS2.DROSO.gi|2 TEK-YKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMHKYQAH
cons . :* : *.
Cf_Contig765_su GATDVTGFGILGHANNFGAA-------------------------
gi|93569092|gb| AATDVTGFGILGHSTNLAQNQLLPIRFEIHTLPIIKHMKKLEDHL
gi|328864870|gb ACTDVTGFGLLGHSMNLAKNQNAAVYFEIDTLPIMQGMVEIDATL
scaffold_21_sub AGTDVTGFGLLGHAQNLMDNQIAKVGIELHTFPCIANTLKINDNI
gi|340501239|gb ACTDVTGFGIKGHSF-LAEV--KEVDLIINNLPTIKYVASIDGKA
contig_36_subse GATDVTGFGILGHANNFGAA-------------------------
Lt_contig6185_s GATDVTGFGILGHANNFGAA-------------------------
PHYCAscaffold_4 SATDVTGFGIVAHARNQAKSQLGDVSFEIHTLPIIKNMAKVNEAI
supercont1.927_ AATDVTGFGILGHANNLAQAQKAKLTLRIDSLPVIKGTIAVDRVL
TcIL3000_10_v2. GATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRLM
SPS2.DROSO.gi|2 CATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLV
cons **:****: .*:
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| N--HPFKLLKGTSAETSGGLLISMSR-ENAEAFCKEIY-------
gi|328864870|gb N--YNYNLLKGMSAETSGGLLVALPA-DKAQAFIDDMQ-------
scaffold_21_sub M---NFRLRDGYSAETSGGLMISMTE-ADAIAYCAELR-------
gi|340501239|gb ---RDFK-FKGLSPETSGGLLICLEK-NKAKEFISEMK-------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 G--NSFKLLDGFAAETSGGLLLCLPA-ENADAYIKELREL-DGK-
supercont1.927_ KGGALFNLATGYSAETSGGLLMCMAP-ADADAFC-----------
TcIL3000_10_v2. D--DKFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDA-DGE-
SPS2.DROSO.gi|2 G--QSTKFRSGRSVETSGGLLICLPA-DAADKFCRDFEEATNGEQ
cons
Cf_Contig765_su ------------------------------Q
gi|93569092|gb| ------------------------------E
gi|328864870|gb ------------------------------E
scaffold_21_sub ------------------------------E
gi|340501239|gb ------------------------------D
contig_36_subse ------------------------------Q
Lt_contig6185_s ------------------------------Q
PHYCAscaffold_4 PAWVVGRVVAG--SKD-AYIAPDSKVIE-VT
supercont1.927_ ------------------------------R
TcIL3000_10_v2. PAWVVGRVVTRADDSPAAVLEKDYKII--EV
SPS2.DROSO.gi|2 KSFQIGHVTAA-NESD-AVLCEDVEFIEVSL
cons