T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=93
*
 BAD AVG GOOD
*
Cf_Contig765_su   :  95
gi|93569092|gb|   :  95
gi|328864870|gb   :  93
scaffold_21_sub   :  92
gi|340501239|gb   :  87
contig_36_subse   :  95
Lt_contig6185_s   :  95
PHYCAscaffold_4   :  94
supercont1.927_   :  93
TcIL3000_10_v2.   :  94
SPS2.DROSO.gi|2   :  92
cons              :  93

Cf_Contig765_su   -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSPG
gi|93569092|gb|   ---------------------------------------------
gi|328864870|gb   -------------------------------------------EG
scaffold_21_sub   -FDPTSVGLPEGWSLTDFSDLKG-ACKIPQNELQDMLSSLALGDG
gi|340501239|gb   LWNPTDHNLEKTFVLTDYSDLKG-GCKVPQADLKKYLEKLGNAKI
contig_36_subse   -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTPG
Lt_contig6185_s   -FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATPG
PHYCAscaffold_4   -FDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLANDLK
supercont1.927_   -WDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESIGS---
TcIL3000_10_v2.   -FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPG
SPS2.DROSO.gi|2   MFQPEKHGLEPDFQLTKFTTHTGXSCKIPQKVLEKYLRGTEIENK

cons                                                           


Cf_Contig765_su   QK------DVGMDCSIVPLHH-----TNGKGEALFLVSTTDFFFP
gi|93569092|gb|   ---------------------------------FIIFLKKKFFFP
gi|328864870|gb   IG----S-GIGFDCSVVPTKF----------NDIVMVSTTDFFFP
scaffold_21_sub   NNLGTADGRIALDCSIRETR-----------QGHYVISTTDFFFP
gi|340501239|gb   TS-------EAPDVSVRPVRN---------TKTKKLISTIDFFYP
contig_36_subse   QK------DVGMDCSIVPLHH-----TNSKGEALFLVSTTDFFFP
Lt_contig6185_s   QK------DVGVDCSIVPLQR-----TNSKGEALFLVSTTDFFFP
PHYCAscaffold_4   PN----E-TPGMDSSVVKISH---------GTDLYLVSTTDFFFP
supercont1.927_   -G------DIRMDCSILDTSIPGMYLLNVCQPGVVMVSTTDFFYP
TcIL3000_10_v2.   QK------DAGMDCSIVKLQH-----KDESGNQLYMVSTTDFFFP
SPS2.DROSO.gi|2   NNDGYLI-GSGMDCAVIPLKR---------HKDYLLIQTVDFFYP

cons                                                 :. . .**:*


Cf_Contig765_su   SVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDE
gi|93569092|gb|   LVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQ
gi|328864870|gb   NCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQ
scaffold_21_sub   LVDSPYLQGRIGAANVLSDLYAEGVQHCDFVLMLLAASLDMTPQD
gi|340501239|gb   LVEDPYM-GRIACCNVLSDLFSMGVTDIDTVLMVLAVSNKMNAQK
contig_36_subse   SVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHE
Lt_contig6185_s   SVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHE
PHYCAscaffold_4   SVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQ
supercont1.927_   LVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASY
TcIL3000_10_v2.   SVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMDKTE
SPS2.DROSO.gi|2   MVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFSEKE

cons                 .*   *:*. .***** :: *    * : *::. . .:    


Cf_Contig765_su   RLVTTREIMRGFAER---ARLAAT---SVTGGQTVMNPWPLIGGV
gi|93569092|gb|   RQWSSKLMIQGFNDQ---AICAGS---KVSGGQTVKNPWPIVGGV
gi|328864870|gb   RTWSTRGMINGFNDSLDNAKIAGT---NITGGQTVKNPWPIIGGV
scaffold_21_sub   RTICTNLMVRGFRDA---CTEAET---TITGGQTVLNPWAIIGGV
gi|340501239|gb   EVIY-IYIYKYFE--------------------------------
contig_36_subse   RLITTREIMKGFAER---ARLATT---TVTGGQTVMNPWPLIGGV
Lt_contig6185_s   RLITTREIMKGFAER---AHLATT---TVTGGQTVMNPWPLIGGV
PHYCAscaffold_4   RDVVTTQMIRGFNDL---ARQAHT---NVTGGQTVMNPWPIVGGV
supercont1.927_   RTIVTVEMVRGFNDW---CKKAGTKLLKVTGGQSVMNPWPILGGV
TcIL3000_10_v2.   RDICTREMMKGFVDH---VRLAGS---DVTGGQTVMNPWPLIGGI
SPS2.DROSO.gi|2   RDVVIGLVMKGFQNS---LKANGYRNTPLIIRQLKINPWCIIGGI

cons              .      : . *                                 


Cf_Contig765_su   AMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMR-P
gi|93569092|gb|   ATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCVNFHQWLSK-P
gi|328864870|gb   ATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCANAHQWLQGFP
scaffold_21_sub   ATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAVNVHEWRKR-H
gi|340501239|gb   ---------------------------------------------
contig_36_subse   AMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLLR-P
Lt_contig6185_s   AMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLR-P
PHYCAscaffold_4   AMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAVNLFQWKKK-P
supercont1.927_   AQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAVNLHQWLDQ-P
TcIL3000_10_v2.   AMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAVNLKQWIHR-P
SPS2.DROSO.gi|2   ATSVCRSEEIILPSNA-QPGDVLVLTKPLGGQMAMDAHLWQLNQ-

cons                                                           


Cf_Contig765_su   SPLYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLMLKHGAH
gi|93569092|gb|   E--RWEKINTITNAEECEQVFNYATLSMARLNRVGARLMKKYNAH
gi|328864870|gb   E--KWERITGVVTREQIIECWAYAVNSMARLNRTGARMMMKHGAH
scaffold_21_sub   E--KKAKNGDTTGDKNWKIMMHAAVRSMSKLNRFGSKLMTKHNAH
gi|340501239|gb   --------------------------------YFAKFLMKKYKAN
contig_36_subse   SPLYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAH
Lt_contig6185_s   SPLYEDAIKGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAH
PHYCAscaffold_4   E--RWQRVESIVTPEDADVAFQMASESMSRLNLNAAKMMHKYGAH
supercont1.927_   K--WWDQVKHVIDAETVIRAYNVASASMKRLNMVGAQLMHKHNAR
TcIL3000_10_v2.   SPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREAARLMCVHKAH
SPS2.DROSO.gi|2   TEK-YKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMHKYQAH

cons                                                .  :*  : *.


Cf_Contig765_su   GATDVTGFGILGHANNFGAA-------------------------
gi|93569092|gb|   AATDVTGFGILGHSTNLAQNQLLPIRFEIHTLPIIKHMKKLEDHL
gi|328864870|gb   ACTDVTGFGLLGHSMNLAKNQNAAVYFEIDTLPIMQGMVEIDATL
scaffold_21_sub   AGTDVTGFGLLGHAQNLMDNQIAKVGIELHTFPCIANTLKINDNI
gi|340501239|gb   ACTDVTGFGIKGHSF-LAEV--KEVDLIINNLPTIKYVASIDGKA
contig_36_subse   GATDVTGFGILGHANNFGAA-------------------------
Lt_contig6185_s   GATDVTGFGILGHANNFGAA-------------------------
PHYCAscaffold_4   SATDVTGFGIVAHARNQAKSQLGDVSFEIHTLPIIKNMAKVNEAI
supercont1.927_   AATDVTGFGILGHANNLAQAQKAKLTLRIDSLPVIKGTIAVDRVL
TcIL3000_10_v2.   GATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRLM
SPS2.DROSO.gi|2   CATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLV

cons                **:****: .*:                               


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   N--HPFKLLKGTSAETSGGLLISMSR-ENAEAFCKEIY-------
gi|328864870|gb   N--YNYNLLKGMSAETSGGLLVALPA-DKAQAFIDDMQ-------
scaffold_21_sub   M---NFRLRDGYSAETSGGLMISMTE-ADAIAYCAELR-------
gi|340501239|gb   ---RDFK-FKGLSPETSGGLLICLEK-NKAKEFISEMK-------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   G--NSFKLLDGFAAETSGGLLLCLPA-ENADAYIKELREL-DGK-
supercont1.927_   KGGALFNLATGYSAETSGGLLMCMAP-ADADAFC-----------
TcIL3000_10_v2.   D--DKFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDA-DGE-
SPS2.DROSO.gi|2   G--QSTKFRSGRSVETSGGLLICLPA-DAADKFCRDFEEATNGEQ

cons                                                           


Cf_Contig765_su   ------------------------------Q
gi|93569092|gb|   ------------------------------E
gi|328864870|gb   ------------------------------E
scaffold_21_sub   ------------------------------E
gi|340501239|gb   ------------------------------D
contig_36_subse   ------------------------------Q
Lt_contig6185_s   ------------------------------Q
PHYCAscaffold_4   PAWVVGRVVAG--SKD-AYIAPDSKVIE-VT
supercont1.927_   ------------------------------R
TcIL3000_10_v2.   PAWVVGRVVTRADDSPAAVLEKDYKII--EV
SPS2.DROSO.gi|2   KSFQIGHVTAA-NESD-AVLCEDVEFIEVSL

cons