T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=86
*
 BAD AVG GOOD
*
Cf_Contig765_su   :  93
gi|93569092|gb|   :  89
gi|328864870|gb   :  89
scaffold_21_sub   :  70
gi|340501239|gb   :  67
contig_36_subse   :  93
Lt_contig6185_s   :  89
PHYCAscaffold_4   :  89
supercont1.927_   :  88
TcIL3000_10_v2.   :  89
SPS1.MUS.gi|419   :  88
cons              :  86

Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   G--------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ---------------------------------------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------------------------------
supercont1.927_   H----TWDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESI
TcIL3000_10_v2.   ---------------------------------------------
SPS1.MUS.gi|419   MSTRESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL

cons                                                           


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   --------------------IGYDCSISQTKF-------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ------------------------CSIRETR--------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------GMDSSVVKISHGT-----------
supercont1.927_   GSGDI----------------RMDCSILDTSIPGMYLLNTNCYRQ
TcIL3000_10_v2.   ---------------------------------------------
SPS1.MUS.gi|419   QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRH-------------

cons                                                           


Cf_Contig765_su   ---ALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCD
gi|93569092|gb|   --PDIVMIQTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCD
gi|328864870|gb   ------------FFFPNCDDPYLMGKIACANVLSDLYSFGIADCD
scaffold_21_sub   --QGHYVISTTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCD
gi|340501239|gb   -----KLISTIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDID
contig_36_subse   ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
Lt_contig6185_s   ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
PHYCAscaffold_4   ---DLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVD
supercont1.927_   LSAGVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVD
TcIL3000_10_v2.   ----LYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCD
SPS1.MUS.gi|419   --GGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD

cons                          :::*   .*:  *:*...***** :: *    *


Cf_Contig765_su   TMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTGGQTV
gi|93569092|gb|   NMLMLLACSTDMTAEQRQWSSKLMIQGFNDQAICAGSKVSGGQTV
gi|328864870|gb   NMLMILAGSTDMTPEQRTWSTRGMINGFNDNAKIAGTNITGGQTV
scaffold_21_sub   FVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAETTITGGQTV
gi|340501239|gb   TVLMVLAVSNKMNAQKE-IVTS-LMIGFDECAV--GAYVLGG-TI
contig_36_subse   TMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTV
Lt_contig6185_s   TMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTGGQTV
PHYCAscaffold_4   TMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQAHTNVTGGQTV
supercont1.927_   NMLMILASSTQIPASYRTIVTVEMVRGFNDWCKKAGTKVTGGQSV
TcIL3000_10_v2.   TVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVTGGQTV
SPS1.MUS.gi|419   NMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQTV

cons               :**:*. . .:    .      :: ** :      : : ** ::


Cf_Contig765_su   MNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAM
gi|93569092|gb|   KNPWPIVGGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCV
gi|328864870|gb   KNPWPIIGGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCA
scaffold_21_sub   LNPWAIIGGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAV
gi|340501239|gb   INPWPIIGGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAV
contig_36_subse   MNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAV
Lt_contig6185_s   MNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAV
PHYCAscaffold_4   MNPWPIVGGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAV
supercont1.927_   MNPWPILGGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAV
TcIL3000_10_v2.   MNPWPLIGGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAV
SPS1.MUS.gi|419   LNPWIVLGGVATTVCQPNEFIMPDNA-VPGDVLVLTKPLGTQVAV

cons               *** ::**:. ::    : : . .    **:::****:*  :. 


Cf_Contig765_su   NLKQWLMR-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE-
gi|93569092|gb|   NFHQWLSK-PE--RWEKINTITNAEECEQVFNYATLSMARLNRV-
gi|328864870|gb   NAHQWLQGFPE--KWERITGVVTREQIIECWAYAVNSMARLNRT-
scaffold_21_sub   NVHEWRKR-HEKK--AKN-GDTTGDK-------------------
gi|340501239|gb   NLKWYTKDIKD--KLEKIG-FISKE-V-DAFLKAEMEMGTLSILP
contig_36_subse   NLKQWLLR-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE-
Lt_contig6185_s   NLKQWLLR-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE-
PHYCAscaffold_4   NLFQWKKK-PE--RWQRVESIVTPEDADVAFQMASESMSRLNLN-
supercont1.927_   NLHQWLDQ-PK--WWDQVKHVIDAETVIRAYNVASASMKRLNMV-
TcIL3000_10_v2.   NLKQWIHR-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE-
SPS1.MUS.gi|419   AVHQWLDI-PE--KWNKIKLLVTQEDVELAYQEAMMNMARLNRT-

cons                  :     .             :                    


Cf_Contig765_su   ---GARLMLKHGAHG-ATDVTGFGILGHA----------------
gi|93569092|gb|   ---GARLMKKYNAHA-ATDVTGFGILGHS----------------
gi|328864870|gb   ---GARMMMKHGAHA-CTDVTGFGLLGHS----------------
scaffold_21_sub   ------NIRNYDACGGSFDVKAPFRETHDTQRPCWYRRYWIWFIR
gi|340501239|gb   SFKNIRLMHALMQDSELRDILSF-----W----------------
contig_36_subse   ---GARLMRKHGAHG-ATDVTGFGILGHA----------------
Lt_contig6185_s   ---GARLMRKHGAHG-ATDVTGFGILGHA----------------
PHYCAscaffold_4   ---AAKMMHKYGAHS-ATDVTGFGIVAHA----------------
supercont1.927_   ---GAQLMHKHNARA-ATDVTGFGILGHA----------------
TcIL3000_10_v2.   ---AARLMCVHKAHG-ATDVTGFGIIGHA----------------
SPS1.MUS.gi|419   ---AAGLMHTFNAHA-ATDITGFGILGHA----------------

cons                     :      .   *: .                       


Cf_Contig765_su   ---------NNFGAA------------------------------
gi|93569092|gb|   ---------TNLAQNQLLPI-RFEIHTLPIIKHMKKLEDHLN--H
gi|328864870|gb   ---------MNLAKNQNAAV-YFEIDTLPIMQGMVEIDATLN--Y
scaffold_21_sub   ACPKPYGQSNRQSWYRTSYI-SMHC---EYFKNQRQYNE-FS--T
gi|340501239|gb   ---------QKYRKNKISLIIYLQLNMWQVTE-KREIS-------
contig_36_subse   ---------NNFGAA------------------------------
Lt_contig6185_s   ---------NNFGAAQRS-L-CLVLERLPMFKTAVAASKRMN--D
PHYCAscaffold_4   ---------RNQAKSQLGDV-SFEIHTLPIIKNMAKVNEAIG--N
supercont1.927_   ---------NNLAQAQKAKL-TLRIDSLPVIKGTIAVDRVLKGGA
TcIL3000_10_v2.   ---------TNLGGAQEAKL-CLVLNSLPMYKGAVKASRLMD--D
SPS1.MUS.gi|419   ---------QNLAKQQRNEV-SFVIHNLPVLAKMAAVSKACG--N

cons                        .                                  


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   PFKLLKGTSAETSGGLLISMSRE-NAEAFCKE-------------
gi|328864870|gb   NYNLLKGMSAETSGGLLVALPAD-KAQAFIDDM------------
scaffold_21_sub   ERRLF--------GN------------WWIDDFYDR---GRCYS-
gi|340501239|gb   --NLNKGVRKLVE------------VYLFVKKIRQR---------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   KYRLLEGYSPETSGGLLVAFPNTTAAEAFCAELTEV--DDGCPSW
PHYCAscaffold_4   SFKLLDGFAAETSGGLLLCLPAE-NADAYIKELREL---DGKPAW
supercont1.927_   LFNLATGYSAETSGGLLMCMAPA-DADAFCRAIHAE---EGWKAF
TcIL3000_10_v2.   KFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDA---DGEPAW
SPS1.MUS.gi|419   MFGLMHGTCPETSGGLLICLPRE-QAARFCAEIKSPKYGEGHQAW

cons                                                           


Cf_Contig765_su   ---------------------------------------Q
gi|93569092|gb|   ---------------------------------------I
gi|328864870|gb   ---------------------------------------Q
scaffold_21_sub   LLC----------------------------------RIE
gi|340501239|gb   -----------------------------------NLFRK
contig_36_subse   ---------------------------------------Q
Lt_contig6185_s   IVGH----------------------------------VE
PHYCAscaffold_4   VVGRVVAGSKDAYIAPDSKVIEV--------------TPE
supercont1.927_   VVGQVIEGDNTACLSDTVEFI-----------------EV
TcIL3000_10_v2.   VVGR-----------------------------------V
SPS1.MUS.gi|419   IIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS

cons