T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:4 sec.
SCORE=86
*
BAD AVG GOOD
*
Cf_Contig765_su : 93
gi|93569092|gb| : 89
gi|328864870|gb : 89
scaffold_21_sub : 70
gi|340501239|gb : 67
contig_36_subse : 93
Lt_contig6185_s : 89
PHYCAscaffold_4 : 89
supercont1.927_ : 88
TcIL3000_10_v2. : 89
SPS1.MUS.gi|419 : 88
cons : 86
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| G--------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ---------------------------------------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------------------------------
supercont1.927_ H----TWDPTVYGLPTDFRLTDYSTLKG-ACKIPQSELTSLLESI
TcIL3000_10_v2. ---------------------------------------------
SPS1.MUS.gi|419 MSTRESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL
cons
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| --------------------IGYDCSISQTKF-------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ------------------------CSIRETR--------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------GMDSSVVKISHGT-----------
supercont1.927_ GSGDI----------------RMDCSILDTSIPGMYLLNTNCYRQ
TcIL3000_10_v2. ---------------------------------------------
SPS1.MUS.gi|419 QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRH-------------
cons
Cf_Contig765_su ---ALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCD
gi|93569092|gb| --PDIVMIQTTDFFFPLVDDPYFQGKIACANVLSDLYSFGIEDCD
gi|328864870|gb ------------FFFPNCDDPYLMGKIACANVLSDLYSFGIADCD
scaffold_21_sub --QGHYVISTTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCD
gi|340501239|gb -----KLISTIDFFYPLVEDPYM-GRIACCNVLSDLFSMGVTDID
contig_36_subse ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
Lt_contig6185_s ---ALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCD
PHYCAscaffold_4 ---DLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVD
supercont1.927_ LSAGVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVD
TcIL3000_10_v2. ----LYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCD
SPS1.MUS.gi|419 --GGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
cons :::* .*: *:*...***** :: * *
Cf_Contig765_su TMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTGGQTV
gi|93569092|gb| NMLMLLACSTDMTAEQRQWSSKLMIQGFNDQAICAGSKVSGGQTV
gi|328864870|gb NMLMILAGSTDMTPEQRTWSTRGMINGFNDNAKIAGTNITGGQTV
scaffold_21_sub FVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAETTITGGQTV
gi|340501239|gb TVLMVLAVSNKMNAQKE-IVTS-LMIGFDECAV--GAYVLGG-TI
contig_36_subse TMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTV
Lt_contig6185_s TMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTGGQTV
PHYCAscaffold_4 TMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQAHTNVTGGQTV
supercont1.927_ NMLMILASSTQIPASYRTIVTVEMVRGFNDWCKKAGTKVTGGQSV
TcIL3000_10_v2. TVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVTGGQTV
SPS1.MUS.gi|419 NMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQTV
cons :**:*. . .: . :: ** : : : ** ::
Cf_Contig765_su MNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAM
gi|93569092|gb| KNPWPIVGGVATSILKTNEFIKPVNA-VPGDVLVLTKPLGTQVCV
gi|328864870|gb KNPWPIIGGVATSVVKKDEFIMPVGA-VAGDVLVLTKPLGTQVCA
scaffold_21_sub LNPWAIIGGVATSVVTRDEYVSSDGA-CVGDVIVLTKPIGTQIAV
gi|340501239|gb INPWPIIGGVGISVVEREEFLMPNNA-KVGDMIILTKPLGT-LAV
contig_36_subse MNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAV
Lt_contig6185_s MNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAV
PHYCAscaffold_4 MNPWPIVGGVAMSVRSESQIIRPENA-VVGDVIILTKPLGTQVAV
supercont1.927_ MNPWPILGGVAQSVMLATDVITPENA-RAGDVMVLTKPLGTQLAV
TcIL3000_10_v2. MNPWPLIGGIAMSVVPESQMVRPTGL-RPGDILVLTKPLGCQIAV
SPS1.MUS.gi|419 LNPWIVLGGVATTVCQPNEFIMPDNA-VPGDVLVLTKPLGTQVAV
cons *** ::**:. :: : : . . **:::****:* :.
Cf_Contig765_su NLKQWLMR-PSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE-
gi|93569092|gb| NFHQWLSK-PE--RWEKINTITNAEECEQVFNYATLSMARLNRV-
gi|328864870|gb NAHQWLQGFPE--KWERITGVVTREQIIECWAYAVNSMARLNRT-
scaffold_21_sub NVHEWRKR-HEKK--AKN-GDTTGDK-------------------
gi|340501239|gb NLKWYTKDIKD--KLEKIG-FISKE-V-DAFLKAEMEMGTLSILP
contig_36_subse NLKQWLLR-PSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE-
Lt_contig6185_s NLKQWLLR-PSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE-
PHYCAscaffold_4 NLFQWKKK-PE--RWQRVESIVTPEDADVAFQMASESMSRLNLN-
supercont1.927_ NLHQWLDQ-PK--WWDQVKHVIDAETVIRAYNVASASMKRLNMV-
TcIL3000_10_v2. NLKQWIHR-PSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNRE-
SPS1.MUS.gi|419 AVHQWLDI-PE--KWNKIKLLVTQEDVELAYQEAMMNMARLNRT-
cons : . :
Cf_Contig765_su ---GARLMLKHGAHG-ATDVTGFGILGHA----------------
gi|93569092|gb| ---GARLMKKYNAHA-ATDVTGFGILGHS----------------
gi|328864870|gb ---GARMMMKHGAHA-CTDVTGFGLLGHS----------------
scaffold_21_sub ------NIRNYDACGGSFDVKAPFRETHDTQRPCWYRRYWIWFIR
gi|340501239|gb SFKNIRLMHALMQDSELRDILSF-----W----------------
contig_36_subse ---GARLMRKHGAHG-ATDVTGFGILGHA----------------
Lt_contig6185_s ---GARLMRKHGAHG-ATDVTGFGILGHA----------------
PHYCAscaffold_4 ---AAKMMHKYGAHS-ATDVTGFGIVAHA----------------
supercont1.927_ ---GAQLMHKHNARA-ATDVTGFGILGHA----------------
TcIL3000_10_v2. ---AARLMCVHKAHG-ATDVTGFGIIGHA----------------
SPS1.MUS.gi|419 ---AAGLMHTFNAHA-ATDITGFGILGHA----------------
cons : . *: .
Cf_Contig765_su ---------NNFGAA------------------------------
gi|93569092|gb| ---------TNLAQNQLLPI-RFEIHTLPIIKHMKKLEDHLN--H
gi|328864870|gb ---------MNLAKNQNAAV-YFEIDTLPIMQGMVEIDATLN--Y
scaffold_21_sub ACPKPYGQSNRQSWYRTSYI-SMHC---EYFKNQRQYNE-FS--T
gi|340501239|gb ---------QKYRKNKISLIIYLQLNMWQVTE-KREIS-------
contig_36_subse ---------NNFGAA------------------------------
Lt_contig6185_s ---------NNFGAAQRS-L-CLVLERLPMFKTAVAASKRMN--D
PHYCAscaffold_4 ---------RNQAKSQLGDV-SFEIHTLPIIKNMAKVNEAIG--N
supercont1.927_ ---------NNLAQAQKAKL-TLRIDSLPVIKGTIAVDRVLKGGA
TcIL3000_10_v2. ---------TNLGGAQEAKL-CLVLNSLPMYKGAVKASRLMD--D
SPS1.MUS.gi|419 ---------QNLAKQQRNEV-SFVIHNLPVLAKMAAVSKACG--N
cons .
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| PFKLLKGTSAETSGGLLISMSRE-NAEAFCKE-------------
gi|328864870|gb NYNLLKGMSAETSGGLLVALPAD-KAQAFIDDM------------
scaffold_21_sub ERRLF--------GN------------WWIDDFYDR---GRCYS-
gi|340501239|gb --NLNKGVRKLVE------------VYLFVKKIRQR---------
contig_36_subse ---------------------------------------------
Lt_contig6185_s KYRLLEGYSPETSGGLLVAFPNTTAAEAFCAELTEV--DDGCPSW
PHYCAscaffold_4 SFKLLDGFAAETSGGLLLCLPAE-NADAYIKELREL---DGKPAW
supercont1.927_ LFNLATGYSAETSGGLLMCMAPA-DADAFCRAIHAE---EGWKAF
TcIL3000_10_v2. KFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDA---DGEPAW
SPS1.MUS.gi|419 MFGLMHGTCPETSGGLLICLPRE-QAARFCAEIKSPKYGEGHQAW
cons
Cf_Contig765_su ---------------------------------------Q
gi|93569092|gb| ---------------------------------------I
gi|328864870|gb ---------------------------------------Q
scaffold_21_sub LLC----------------------------------RIE
gi|340501239|gb -----------------------------------NLFRK
contig_36_subse ---------------------------------------Q
Lt_contig6185_s IVGH----------------------------------VE
PHYCAscaffold_4 VVGRVVAGSKDAYIAPDSKVIEV--------------TPE
supercont1.927_ VVGQVIEGDNTACLSDTVEFI-----------------EV
TcIL3000_10_v2. VVGR-----------------------------------V
SPS1.MUS.gi|419 IIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS
cons