T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=89
*
 BAD AVG GOOD
*
Cf_Contig765_su   :  91
gi|93569092|gb|   :  92
gi|328864870|gb   :  92
scaffold_21_sub   :  90
gi|340501239|gb   :  63
contig_36_subse   :  91
Lt_contig6185_s   :  93
PHYCAscaffold_4   :  91
Contig2813_subs   :  83
supercont1.927_   :  91
TcIL3000_10_v2.   :  92
SPS1.DROSO.gi|2   :  91
cons              :  89

Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   ---------------------------------------------
gi|328864870|gb   ---------------------------------------------
scaffold_21_sub   ---------------------------------------------
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   ---------------------------------------------
Contig2813_subs   ---------------------------------------------
supercont1.927_   W--------------------------DPTVYGLPTDFRLTDYST
TcIL3000_10_v2.   ---------------------------------------------
SPS1.DROSO.gi|2   MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFAD

cons                                                           


Cf_Contig765_su   ---------------------------------------------
gi|93569092|gb|   -----------------------------------------GIGY
gi|328864870|gb   -----------------------------------------GIGF
scaffold_21_sub   ------------------------------------------IAL
gi|340501239|gb   ---------------------------------------------
contig_36_subse   ---------------------------------------------
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   -------------------------------------------GM
Contig2813_subs   ---------------------------------------------
supercont1.927_   LKG-ACKIPQSELTSLLESIGSG------------------DIRM
TcIL3000_10_v2.   ---------------------------------------------
SPS1.DROSO.gi|2   LKGRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGL

cons                                                           


Cf_Contig765_su   ---------------------------ALFLVSTTDFFFPSVADP
gi|93569092|gb|   DCSISQT----------------KF-PDIVMIQTTDFFFPLVDDP
gi|328864870|gb   DCSVVPT----------------KF-NDIVMVSTTDFFFPNCDDP
scaffold_21_sub   DCSIRET----------------RQ--GHYVISTTDFFFPLVDSP
gi|340501239|gb   ------------------------------LISTIDFFYPLVEDP
contig_36_subse   ---------------------------ALFLVSTTDFFFPSVSDP
Lt_contig6185_s   ---------------------------ALFLVSTTDFFFPSVSDP
PHYCAscaffold_4   DSSVVKI----------------SHGTDLYLVSTTDFFFPSVEDP
Contig2813_subs   -------------------------------IITVDFFTPVVDDA
supercont1.927_   DCSILDTSIPGMYLLNVCQVYKTAI-PGVVMVSTTDFFYPLVDDP
TcIL3000_10_v2.   ----------------------------LYMVSTTDFFFPSVEDP
SPS1.DROSO.gi|2   DCSVIPL----------------RH-GGLCLVQTTDFFYPIVDDP

cons                                             : * *** *   ..


Cf_Contig765_su   FLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDERLVTT
gi|93569092|gb|   YFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQRQWSS
gi|328864870|gb   YLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQRTWST
scaffold_21_sub   YLQGRIGAANVLSDLYAEGVQHCDFVLMLLAASLDMTPQDRTICT
gi|340501239|gb   YM-GRIACCNVLSDLFSMGVTDIDTVLMVLAVSNKMNAQKE-IVT
contig_36_subse   FLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITT
Lt_contig6185_s   FLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITT
PHYCAscaffold_4   YVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVT
Contig2813_subs   YTFGAIAAANSLSDVYAMGTLSPPRLFHMHISCLYLKRLFK--LK
supercont1.927_   YTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASYRTIVT
TcIL3000_10_v2.   YLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMDKTERDICT
SPS1.DROSO.gi|2   YMMGKIACANVLSDLYAMGVTDCDNMLMLLAVSTKMTEKERDVVI

cons              :  * *...* *** :: *      :: :   .  :    .    


Cf_Contig765_su   REIMRGFAERARLAATSVTGGQTVMNPWPLIGGVAMAVVSEAEMV
gi|93569092|gb|   KLMIQGFNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEFI
gi|328864870|gb   RGMINGFNDNAKIAGTNITGGQTVKNPWPIIGGVATSVVKKDEFI
scaffold_21_sub   NLMVRGFRDACTEAETTITGGQTVLNPWAIIGGVATSVVTRDEYV
gi|340501239|gb   S-LMIGFDECAV--GAYVLGG-TIINPWPIIGGVGISVVEREEFL
contig_36_subse   REIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMV
Lt_contig6185_s   REIMKGFAERAHLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMV
PHYCAscaffold_4   TQMIRGFNDLARQAHTNVTGGQTVMNPWPIVGGVAMSVRSESQII
Contig2813_subs   TYVKRGAYDKAAEAGVSILGGHTIDDSEPKFGLSVTGIVHPHKIW
supercont1.927_   VEMVRGFNDWCKKAGTKVTGGQSVMNPWPILGGVAQSVMLATDVI
TcIL3000_10_v2.   REMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAMSVVPESQMV
SPS1.DROSO.gi|2   PLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVASTICQPNEYI

cons                :  *  :        : ** :: :.   .*     :    .  


Cf_Contig765_su   RPAGLLRAGDVLVLTKPLGCQIAMNLKQ-WLMR-PSPLYEDVIEG
gi|93569092|gb|   KPVNA-VPGDVLVLTKPLGTQVCVNFHQ-WLSK-PER--WEKINT
gi|328864870|gb   MPVGA-VAGDVLVLTKPLGTQVCANAHQ-WLQGFPEK--WERITG
scaffold_21_sub   SSDGA-CVGDVIVLTKPIGTQIAVNVHE-WRKR-HEK--KAKNGD
gi|340501239|gb   MPNNA-KVGDMIILTKPLGT-LAVNLKW-YTKDIKDK--LEKIGF
contig_36_subse   RPAGLLCAGDILVLTKPLGCQVAVNLKQ-WLLR-PSPLYEEAIAG
Lt_contig6185_s   RPTGLLRTGDILVLTKPLGCQVAVNLKQ-WLLR-PSPLYEDAIKG
PHYCAscaffold_4   RPENA-VVGDVIILTKPLGTQVAVNLFQ-WKKK-PER--WQRVES
Contig2813_subs   KNNTA-RDGDAIILTKRIGTGICTTAMKRNMAS-PAT--AQAAIK
supercont1.927_   TPENA-RAGDVMVLTKPLGTQLAVNLHQ-WLDQ-PKW--WDQVKH
TcIL3000_10_v2.   RPTGL-RPGDILVLTKPLGCQIAVNLKQ-WIHR-PSPIYESRIQG
SPS1.DROSO.gi|2   VPDNA-VVGDVLVLTKPLGTQVAVNAHQ-WIDQ-PER--WNRIKL

cons                      ** ::*** :*  :. .                    


Cf_Contig765_su   HISRDEIEELYNKATDSMRRLNRE----GARLMLKHGAHG-ATDV
gi|93569092|gb|   ITNAEECEQVFNYATLSMARLNRV----GARLMKKYNAHA-ATDV
gi|328864870|gb   VVTREQIIECWAYAVNSMARLNRT----GARMMMKHGAHA-CTDV
scaffold_21_sub   TTGDKNWKIMMHAAVRSMSKLNRF----GSKLMTKHNAHA-GTDV
gi|340501239|gb   -ISKE-V-DAFLKAEMEMGTLSILPSFKNIRLMHALMQDSELRDI
contig_36_subse   HISPEEIEELYNMATDSMRRLNRE----GARLMRKHGAHG-ATDV
Lt_contig6185_s   HISPEEIEELYNMATDSMRRLNRE----GARLMRKHGAHG-ATDV
PHYCAscaffold_4   IVTPEDADVAFQMASESMSRLNLN----AAKMMHKYGAHS-ATDV
Contig2813_subs   TMSELNKYAAAQEVIKTMSELNKY----AAEVLLKYKVSS-GADV
supercont1.927_   VIDAETVIRAYNVASASMKRLNMV----GAQLMHKHNARA-ATDV
TcIL3000_10_v2.   KMDLEEIDELYCAAAEGMKRLNRE----AARLMCVHKAHG-ATDV
SPS1.DROSO.gi|2   VVSEKNVRKAYHRAMNSMARLNRV----AARLMHKYNAHG-ATDI

cons                           .   *  *.        .::      .   *:


Cf_Contig765_su   TGFGILGHANNFGAAQQ-SL-CLVLDRLPMLKTAVAASRLMQ--D
gi|93569092|gb|   TGFGILGHSTNLAQNQLLPI-RFEIHTLPIIKHMKKLEDHLN--H
gi|328864870|gb   TGFGLLGHSMNLAKNQNAAV-YFEIDTLPIMQGMVEIDATLN--Y
scaffold_21_sub   TGFGLLGHAQNLMDNQIAKV-GIELHTFPCIANTLKINDNIM---
gi|340501239|gb   LSF-----WQKYRKNKISLIIYLQLNMWQVTE-KREISN------
contig_36_subse   TGFGILGHANNFGAAQR-SL-CLVLERLPMFKTAVAASKRMN--D
Lt_contig6185_s   TGFGILGHANNFGAA------------------------------
PHYCAscaffold_4   TGFGIVAHARNQAKSQLGDV-SFEIHTLPIIKNMAKVNEAIG--N
Contig2813_subs   T-FGLAGHMWEMAKSSDLSV-HLYFDQIPL---------------
supercont1.927_   TGFGILGHANNLAQAQKAKL-TLRIDSLPVIKGTIAVDRVLKGGA
TcIL3000_10_v2.   TGFGIIGHATNLGGAQEAKL-CLVLNSLPMYKGAVKASRLMD--D
SPS1.DROSO.gi|2   TGFGLLGHAQTLAAHQKKDV-SFVIHNLPVIAKMAAVAKACG--N

cons                *                                          


Cf_Contig765_su   KYRLFEGYSAETSGGLLVALASREAAEAFQKELEEADGGCPSWIV
gi|93569092|gb|   PFKLLKGTSAETSGGLLISMSR-ENAEAFCKEIYEIEK-QPAWII
gi|328864870|gb   NYNLLKGMSAETSGGLLVALPA-DKAQAFIDDMQEIDK-QPAWII
scaffold_21_sub   NFRLRDGYSAETSGGLMISMTE-ADAIAYCAELREV---------
gi|340501239|gb   ---LNKGVRKLV------------EVYLFVKKIRQRNL-FRKKIM
contig_36_subse   KYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTAIDGGCPSWIV
Lt_contig6185_s   ---------------------------------------------
PHYCAscaffold_4   SFKLLDGFAAETSGGLLLCLPA-ENADAYIKELRELDG-KPAWVV
Contig2813_subs   ---------------------------------------------
supercont1.927_   LFNLATGYSAETSGGLLMCMAP-ADADAFCRAIHAEEG-WKAFVV
TcIL3000_10_v2.   KFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDADG-EPAWVV
SPS1.DROSO.gi|2   MFQLLQGHSAETSGGLLICLPR-EQAAAYCKDIEKQEG-YQAWII

cons                                                           


Cf_Contig765_su   GRV-----------------------E
gi|93569092|gb|   GD------------------------V
gi|328864870|gb   GKVKA-------------------SDK
scaffold_21_sub   --------------------------E
gi|340501239|gb   GLNVILEKLLKEKIIRLEK--MLLSKK
contig_36_subse   GHV-----------------------E
Lt_contig6185_s   --------------------------Q
PHYCAscaffold_4   GRVVAGSK--DAYIAPDSKVIEVTPED
Contig2813_subs   --------------------------I
supercont1.927_   GQVIEGDN--TACLSDTVEFI----EV
TcIL3000_10_v2.   GR------------------------V
SPS1.DROSO.gi|2   GIVEKGNK--TARIIDKPRVIEVPAKD

cons