T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:4 sec.
SCORE=89
*
BAD AVG GOOD
*
Cf_Contig765_su : 91
gi|93569092|gb| : 92
gi|328864870|gb : 92
scaffold_21_sub : 90
gi|340501239|gb : 63
contig_36_subse : 91
Lt_contig6185_s : 93
PHYCAscaffold_4 : 91
Contig2813_subs : 83
supercont1.927_ : 91
TcIL3000_10_v2. : 92
SPS1.DROSO.gi|2 : 91
cons : 89
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| ---------------------------------------------
gi|328864870|gb ---------------------------------------------
scaffold_21_sub ---------------------------------------------
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 ---------------------------------------------
Contig2813_subs ---------------------------------------------
supercont1.927_ W--------------------------DPTVYGLPTDFRLTDYST
TcIL3000_10_v2. ---------------------------------------------
SPS1.DROSO.gi|2 MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFAD
cons
Cf_Contig765_su ---------------------------------------------
gi|93569092|gb| -----------------------------------------GIGY
gi|328864870|gb -----------------------------------------GIGF
scaffold_21_sub ------------------------------------------IAL
gi|340501239|gb ---------------------------------------------
contig_36_subse ---------------------------------------------
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 -------------------------------------------GM
Contig2813_subs ---------------------------------------------
supercont1.927_ LKG-ACKIPQSELTSLLESIGSG------------------DIRM
TcIL3000_10_v2. ---------------------------------------------
SPS1.DROSO.gi|2 LKGRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGL
cons
Cf_Contig765_su ---------------------------ALFLVSTTDFFFPSVADP
gi|93569092|gb| DCSISQT----------------KF-PDIVMIQTTDFFFPLVDDP
gi|328864870|gb DCSVVPT----------------KF-NDIVMVSTTDFFFPNCDDP
scaffold_21_sub DCSIRET----------------RQ--GHYVISTTDFFFPLVDSP
gi|340501239|gb ------------------------------LISTIDFFYPLVEDP
contig_36_subse ---------------------------ALFLVSTTDFFFPSVSDP
Lt_contig6185_s ---------------------------ALFLVSTTDFFFPSVSDP
PHYCAscaffold_4 DSSVVKI----------------SHGTDLYLVSTTDFFFPSVEDP
Contig2813_subs -------------------------------IITVDFFTPVVDDA
supercont1.927_ DCSILDTSIPGMYLLNVCQVYKTAI-PGVVMVSTTDFFYPLVDDP
TcIL3000_10_v2. ----------------------------LYMVSTTDFFFPSVEDP
SPS1.DROSO.gi|2 DCSVIPL----------------RH-GGLCLVQTTDFFYPIVDDP
cons : * *** * ..
Cf_Contig765_su FLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDERLVTT
gi|93569092|gb| YFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQRQWSS
gi|328864870|gb YLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQRTWST
scaffold_21_sub YLQGRIGAANVLSDLYAEGVQHCDFVLMLLAASLDMTPQDRTICT
gi|340501239|gb YM-GRIACCNVLSDLFSMGVTDIDTVLMVLAVSNKMNAQKE-IVT
contig_36_subse FLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITT
Lt_contig6185_s FLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITT
PHYCAscaffold_4 YVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVT
Contig2813_subs YTFGAIAAANSLSDVYAMGTLSPPRLFHMHISCLYLKRLFK--LK
supercont1.927_ YTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASYRTIVT
TcIL3000_10_v2. YLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMDKTERDICT
SPS1.DROSO.gi|2 YMMGKIACANVLSDLYAMGVTDCDNMLMLLAVSTKMTEKERDVVI
cons : * *...* *** :: * :: : . : .
Cf_Contig765_su REIMRGFAERARLAATSVTGGQTVMNPWPLIGGVAMAVVSEAEMV
gi|93569092|gb| KLMIQGFNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEFI
gi|328864870|gb RGMINGFNDNAKIAGTNITGGQTVKNPWPIIGGVATSVVKKDEFI
scaffold_21_sub NLMVRGFRDACTEAETTITGGQTVLNPWAIIGGVATSVVTRDEYV
gi|340501239|gb S-LMIGFDECAV--GAYVLGG-TIINPWPIIGGVGISVVEREEFL
contig_36_subse REIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMV
Lt_contig6185_s REIMKGFAERAHLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMV
PHYCAscaffold_4 TQMIRGFNDLARQAHTNVTGGQTVMNPWPIVGGVAMSVRSESQII
Contig2813_subs TYVKRGAYDKAAEAGVSILGGHTIDDSEPKFGLSVTGIVHPHKIW
supercont1.927_ VEMVRGFNDWCKKAGTKVTGGQSVMNPWPILGGVAQSVMLATDVI
TcIL3000_10_v2. REMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAMSVVPESQMV
SPS1.DROSO.gi|2 PLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVASTICQPNEYI
cons : * : : ** :: :. .* : .
Cf_Contig765_su RPAGLLRAGDVLVLTKPLGCQIAMNLKQ-WLMR-PSPLYEDVIEG
gi|93569092|gb| KPVNA-VPGDVLVLTKPLGTQVCVNFHQ-WLSK-PER--WEKINT
gi|328864870|gb MPVGA-VAGDVLVLTKPLGTQVCANAHQ-WLQGFPEK--WERITG
scaffold_21_sub SSDGA-CVGDVIVLTKPIGTQIAVNVHE-WRKR-HEK--KAKNGD
gi|340501239|gb MPNNA-KVGDMIILTKPLGT-LAVNLKW-YTKDIKDK--LEKIGF
contig_36_subse RPAGLLCAGDILVLTKPLGCQVAVNLKQ-WLLR-PSPLYEEAIAG
Lt_contig6185_s RPTGLLRTGDILVLTKPLGCQVAVNLKQ-WLLR-PSPLYEDAIKG
PHYCAscaffold_4 RPENA-VVGDVIILTKPLGTQVAVNLFQ-WKKK-PER--WQRVES
Contig2813_subs KNNTA-RDGDAIILTKRIGTGICTTAMKRNMAS-PAT--AQAAIK
supercont1.927_ TPENA-RAGDVMVLTKPLGTQLAVNLHQ-WLDQ-PKW--WDQVKH
TcIL3000_10_v2. RPTGL-RPGDILVLTKPLGCQIAVNLKQ-WIHR-PSPIYESRIQG
SPS1.DROSO.gi|2 VPDNA-VVGDVLVLTKPLGTQVAVNAHQ-WIDQ-PER--WNRIKL
cons ** ::*** :* :. .
Cf_Contig765_su HISRDEIEELYNKATDSMRRLNRE----GARLMLKHGAHG-ATDV
gi|93569092|gb| ITNAEECEQVFNYATLSMARLNRV----GARLMKKYNAHA-ATDV
gi|328864870|gb VVTREQIIECWAYAVNSMARLNRT----GARMMMKHGAHA-CTDV
scaffold_21_sub TTGDKNWKIMMHAAVRSMSKLNRF----GSKLMTKHNAHA-GTDV
gi|340501239|gb -ISKE-V-DAFLKAEMEMGTLSILPSFKNIRLMHALMQDSELRDI
contig_36_subse HISPEEIEELYNMATDSMRRLNRE----GARLMRKHGAHG-ATDV
Lt_contig6185_s HISPEEIEELYNMATDSMRRLNRE----GARLMRKHGAHG-ATDV
PHYCAscaffold_4 IVTPEDADVAFQMASESMSRLNLN----AAKMMHKYGAHS-ATDV
Contig2813_subs TMSELNKYAAAQEVIKTMSELNKY----AAEVLLKYKVSS-GADV
supercont1.927_ VIDAETVIRAYNVASASMKRLNMV----GAQLMHKHNARA-ATDV
TcIL3000_10_v2. KMDLEEIDELYCAAAEGMKRLNRE----AARLMCVHKAHG-ATDV
SPS1.DROSO.gi|2 VVSEKNVRKAYHRAMNSMARLNRV----AARLMHKYNAHG-ATDI
cons . * *. .:: . *:
Cf_Contig765_su TGFGILGHANNFGAAQQ-SL-CLVLDRLPMLKTAVAASRLMQ--D
gi|93569092|gb| TGFGILGHSTNLAQNQLLPI-RFEIHTLPIIKHMKKLEDHLN--H
gi|328864870|gb TGFGLLGHSMNLAKNQNAAV-YFEIDTLPIMQGMVEIDATLN--Y
scaffold_21_sub TGFGLLGHAQNLMDNQIAKV-GIELHTFPCIANTLKINDNIM---
gi|340501239|gb LSF-----WQKYRKNKISLIIYLQLNMWQVTE-KREISN------
contig_36_subse TGFGILGHANNFGAAQR-SL-CLVLERLPMFKTAVAASKRMN--D
Lt_contig6185_s TGFGILGHANNFGAA------------------------------
PHYCAscaffold_4 TGFGIVAHARNQAKSQLGDV-SFEIHTLPIIKNMAKVNEAIG--N
Contig2813_subs T-FGLAGHMWEMAKSSDLSV-HLYFDQIPL---------------
supercont1.927_ TGFGILGHANNLAQAQKAKL-TLRIDSLPVIKGTIAVDRVLKGGA
TcIL3000_10_v2. TGFGIIGHATNLGGAQEAKL-CLVLNSLPMYKGAVKASRLMD--D
SPS1.DROSO.gi|2 TGFGLLGHAQTLAAHQKKDV-SFVIHNLPVIAKMAAVAKACG--N
cons *
Cf_Contig765_su KYRLFEGYSAETSGGLLVALASREAAEAFQKELEEADGGCPSWIV
gi|93569092|gb| PFKLLKGTSAETSGGLLISMSR-ENAEAFCKEIYEIEK-QPAWII
gi|328864870|gb NYNLLKGMSAETSGGLLVALPA-DKAQAFIDDMQEIDK-QPAWII
scaffold_21_sub NFRLRDGYSAETSGGLMISMTE-ADAIAYCAELREV---------
gi|340501239|gb ---LNKGVRKLV------------EVYLFVKKIRQRNL-FRKKIM
contig_36_subse KYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTAIDGGCPSWIV
Lt_contig6185_s ---------------------------------------------
PHYCAscaffold_4 SFKLLDGFAAETSGGLLLCLPA-ENADAYIKELRELDG-KPAWVV
Contig2813_subs ---------------------------------------------
supercont1.927_ LFNLATGYSAETSGGLLMCMAP-ADADAFCRAIHAEEG-WKAFVV
TcIL3000_10_v2. KFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDADG-EPAWVV
SPS1.DROSO.gi|2 MFQLLQGHSAETSGGLLICLPR-EQAAAYCKDIEKQEG-YQAWII
cons
Cf_Contig765_su GRV-----------------------E
gi|93569092|gb| GD------------------------V
gi|328864870|gb GKVKA-------------------SDK
scaffold_21_sub --------------------------E
gi|340501239|gb GLNVILEKLLKEKIIRLEK--MLLSKK
contig_36_subse GHV-----------------------E
Lt_contig6185_s --------------------------Q
PHYCAscaffold_4 GRVVAGSK--DAYIAPDSKVIEVTPED
Contig2813_subs --------------------------I
supercont1.927_ GQVIEGDN--TACLSDTVEFI----EV
TcIL3000_10_v2. GR------------------------V
SPS1.DROSO.gi|2 GIVEKGNK--TARIIDKPRVIEVPAKD
cons