T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:2 sec.
SCORE=76
*
BAD AVG GOOD
*
gi|325183812|em : 78
Cf_Contig578_su : 83
gi|93569058|gb| : 56
gi|328876102|gb : 75
scaffold_11_sub : 77
gi|340502518|gb : 51
contig_35_subse : 77
Lt_contig3266_s : 84
PHYCAscaffold_1 : 77
Contig5166_subs : 77
supercont1.7943 : 84
T.congo.pschr.9 : 83
SECP43.HUMAN.gi : 76
cons : 76
gi|325183812|em -------------TLWMGDIQLNWDEAYIGSLFASAVEQ--PSIK
Cf_Contig578_su ------------ASIYVGDLDATINEPQLVELFKSFGT--ILNVR
gi|93569058|gb| YYYYFNKPPNSDLSLYIGDLATDVTDQQLMNAFQ-----------
gi|328876102|gb ------------TSLYVGDLSQEVNELILAELFSKVGRTAVASIH
scaffold_11_sub S-----------ASLYVGDLATDANEALLFEIFNAVGP--VASIR
gi|340502518|gb -------------TLWIGDIEPWMNEKYLEDVFNKVGKT-LNYIK
contig_35_subse ------------ASIYVGDLDAAINEPQLVELFKPFGT--ILNVR
Lt_contig3266_s ------------ASIYVGDLDATINEPQLVELFKSFGT--ILNVR
PHYCAscaffold_1 -------------TLWMGDIQMHWDETFIASLFTTAVEQ--PVIK
Contig5166_subs -------------TLWVGDIEQWMDETYVMNLFSHVGEV--VNVK
supercont1.7943 ------------TNLWCGELKPYMTDIFISQAFNQAGFY-PHTVK
T.congo.pschr.9 Q----------VASLYVGDLDPAISEPQLVEIFRPYGT--ILNVR
SECP43.HUMAN.gi M----------AASLWMGDLEPYMDENFISRAFATMGET-VMSVK
cons .:: *:: : : *
gi|325183812|em LIRDKVTGYPAGYGFLEFPSQQGAQAVLNTFN----GQIVRTSNT
Cf_Contig578_su VCRDIITQRSLGYGYVNFDNHDDAEKAIEAMN----FKRVGDNGN
gi|93569058|gb| ---------------------------------------------
gi|328876102|gb VCRDSATLRSLGYAYVNFYNSVDAERALDTLN----YSLILGRP-
scaffold_11_sub VCRDAVTRRSLGYAYVNYHQLSDAERALDTMN----KEDEDDATE
gi|340502518|gb LIRNKDNGLPSGYCFIEFANRDAEKYYIIILSLYQEFKLLEIGEN
contig_35_subse VCRDIITQRSLGYGYVNFDNHDSAEKAIESMN----FKRVGDKC-
Lt_contig3266_s VCRDIITQRSLGYGYVNFDNHESAEKAIESMN----FKRVGDKC-
PHYCAscaffold_1 LIRDKVTGYPAGYGFLEFPTQQGAQQVLEAYN----GQLIRLANT
Contig5166_subs LIRDKNTMIPSGYGFVEFASHATAVKILENYN----GTPIPNA--
supercont1.7943 MINNRNTGMPAGYWY------------------------------
T.congo.pschr.9 VCRDIITQRSLGYGYVNYDNANSATKAMEEMN----FKRVERSTC
SECP43.HUMAN.gi IIRNRLTGIPAGYCFVEFADLATAEKCLHKIN----GKPLPGATP
cons
gi|325183812|em IHRFRLNWGAGGRRIDTVEDHSIFVGDLAPEVSDELLLSTFSTRF
Cf_Contig578_su GNIFVKNLETEKYMQHQSLGNNLYVRNFDPEFTDADLLELFK-EY
gi|93569058|gb| ------------------------------------------GRY
gi|328876102|gb ---CRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFS-TY
scaffold_11_sub KKTEESPEASEGKETDEPKGVNLYVKNLEDVVTDDMLRDEFA-AM
gi|340502518|gb HVKYKINIIRY-ME------NNVMSSNLSISVS---------IQV
contig_35_subse ---VRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFT-KF
Lt_contig3266_s ---VRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKHLHDIFT-KF
PHYCAscaffold_1 MHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLSTFNARF
Contig5166_subs GRSFRLNWATMGAN-SNSNEFAIYIGDLSADVTDTVLQNAFIQRY
supercont1.7943 ---------------------------------------------
T.congo.pschr.9 STRGKLHECLYY-MQCQSLGNNLYVRNFDPEFTEKDLNELFK-EY
SECP43.HUMAN.gi AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
cons
gi|325183812|em SSVRGAKVVIDP-VTRMPKGFGFVRFGDKGEADQALQTMNGVY-C
Cf_Contig578_su GNVKSCRVMMS--ESGASRGFGFVSFSDADEANAALREMNGRM-L
gi|93569058|gb| PSVRSARVIMDS-ATGISRGYGFVKFASDVEKDKALIDMNGFY-I
gi|328876102|gb GNILSCKIEY---EKGISKGYGYVHFENQESSEQAILKVNGTI-L
scaffold_11_sub GTITSARIMKDMGKDGRSRGFGFVCFSSPEEATRAVNEMNGKL-I
gi|340502518|gb SVL------KIH--KQKAEDLVLLSFLI-----------------
contig_35_subse GSILSCKVMQD--EEGKSRGYGFVHFKDETSAKDAIVKMNGAA-D
Lt_contig3266_s GAILSCKVMED--EEGKSRGYGFVHFKDETSAKDAIVKMNG----
PHYCAscaffold_1 TSVRGAKVVIDP-ITRMSKGFGFVRFGSKEEADQALQTMNGVY-C
Contig5166_subs PSVKNAKVVTDP-VTGISKGYGFVRFIDENDKNRAMAEMQGQF-I
supercont1.7943 ---------------------------------------------
T.congo.pschr.9 GVIRSCRVMTD--ANGVSRGFGFVSFENADQANAALREMSGRM-L
SECP43.HUMAN.gi PSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL
cons
gi|325183812|em S-SRPMRVSVATDRTKTRAAGYYQQ-YPYQQ----TAYQN--AYG
Cf_Contig578_su N-GKPLIV-------------------------------------
gi|93569058|gb| N-NKPIKASFSTSYASLTTFASYATFASYASF---TSYA------
gi|328876102|gb L-GKPIIVEPFVSKVERFKYLIYQQQYQQHLHQQYLQYQQQFPQQ
scaffold_11_sub A-NKPIFVALAQRREVRRAQLEAQHA-----NRNQQQQQQQQPYG
gi|340502518|gb -------------------------------H---K---------
contig_35_subse HASEPRRGKATRSRFT-YKPISRSEAA------------------
Lt_contig3266_s ---------------------------------------------
PHYCAscaffold_1 S-SRPMRVSVATERNKSRQQNYYNYSAAYGY----PQYQQ-GAYG
Contig5166_subs G-ARPIRISGATPKSPMAKPAAASSSYNNHN----NNYYP---YS
supercont1.7943 ---------------------------------------------
T.congo.pschr.9 N-GKPLVV-------------------------------------
SECP43.HUMAN.gi G-SKPVRLSVAIPKASRVKPVEYSQMYSYSYN---Q-YYQ-QYQN
cons
gi|325183812|em YNYFPQG--YAQQP-------------------------------
Cf_Contig578_su ---------------------------------------------
gi|93569058|gb| --TF-TS--YATLT--------PYAT-------------------
gi|328876102|gb YQQ-QLQQQQAQQK--------QYQQ-------------------
scaffold_11_sub YQA-QGG--YQQQP--------QYGQ-------------------
gi|340502518|gb -----------K--------VKQFKK-------------------
contig_35_subse ---------AARVS--------LVEQ-------------------
Lt_contig3266_s ---------------------------------------------
PHYCAscaffold_1 YAAY-GQ--YGQQG---------NQS-------------------
Contig5166_subs YNH-APG--SFNNS--------NYDYT------------------
supercont1.7943 ---------------------------------------------
T.congo.pschr.9 ---------------------------------------------
SECP43.HUMAN.gi YYA-QWG--YDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDP
cons
gi|325183812|em -------------------------------------GSYAYN
Cf_Contig578_su ----------------------------------------NIA
gi|93569058|gb| -------------------------------------FASSYA
gi|328876102|gb -------------------------------------YQHQLQ
scaffold_11_sub --------------------------------------GSYGQ
gi|340502518|gb -------------------------------------MGLFLE
contig_35_subse -------------------------------------SNFFLQ
Lt_contig3266_s ------------------------------------------A
PHYCAscaffold_1 -------------------------------------QGGYQQ
Contig5166_subs -------------------------------------SYYNNY
supercont1.7943 ------------------------------------------V
T.congo.pschr.9 ----------------------------------------NIA
SECP43.HUMAN.gi MPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
cons