T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:2 sec.
SCORE=76
*
 BAD AVG GOOD
*
gi|325183812|em   :  78
Cf_Contig578_su   :  83
gi|93569058|gb|   :  56
gi|328876102|gb   :  75
scaffold_11_sub   :  77
gi|340502518|gb   :  51
contig_35_subse   :  77
Lt_contig3266_s   :  84
PHYCAscaffold_1   :  77
Contig5166_subs   :  77
supercont1.7943   :  84
T.congo.pschr.9   :  83
SECP43.HUMAN.gi   :  76
cons              :  76

gi|325183812|em   -------------TLWMGDIQLNWDEAYIGSLFASAVEQ--PSIK
Cf_Contig578_su   ------------ASIYVGDLDATINEPQLVELFKSFGT--ILNVR
gi|93569058|gb|   YYYYFNKPPNSDLSLYIGDLATDVTDQQLMNAFQ-----------
gi|328876102|gb   ------------TSLYVGDLSQEVNELILAELFSKVGRTAVASIH
scaffold_11_sub   S-----------ASLYVGDLATDANEALLFEIFNAVGP--VASIR
gi|340502518|gb   -------------TLWIGDIEPWMNEKYLEDVFNKVGKT-LNYIK
contig_35_subse   ------------ASIYVGDLDAAINEPQLVELFKPFGT--ILNVR
Lt_contig3266_s   ------------ASIYVGDLDATINEPQLVELFKSFGT--ILNVR
PHYCAscaffold_1   -------------TLWMGDIQMHWDETFIASLFTTAVEQ--PVIK
Contig5166_subs   -------------TLWVGDIEQWMDETYVMNLFSHVGEV--VNVK
supercont1.7943   ------------TNLWCGELKPYMTDIFISQAFNQAGFY-PHTVK
T.congo.pschr.9   Q----------VASLYVGDLDPAISEPQLVEIFRPYGT--ILNVR
SECP43.HUMAN.gi   M----------AASLWMGDLEPYMDENFISRAFATMGET-VMSVK

cons                           .:: *::     :  :   *            


gi|325183812|em   LIRDKVTGYPAGYGFLEFPSQQGAQAVLNTFN----GQIVRTSNT
Cf_Contig578_su   VCRDIITQRSLGYGYVNFDNHDDAEKAIEAMN----FKRVGDNGN
gi|93569058|gb|   ---------------------------------------------
gi|328876102|gb   VCRDSATLRSLGYAYVNFYNSVDAERALDTLN----YSLILGRP-
scaffold_11_sub   VCRDAVTRRSLGYAYVNYHQLSDAERALDTMN----KEDEDDATE
gi|340502518|gb   LIRNKDNGLPSGYCFIEFANRDAEKYYIIILSLYQEFKLLEIGEN
contig_35_subse   VCRDIITQRSLGYGYVNFDNHDSAEKAIESMN----FKRVGDKC-
Lt_contig3266_s   VCRDIITQRSLGYGYVNFDNHESAEKAIESMN----FKRVGDKC-
PHYCAscaffold_1   LIRDKVTGYPAGYGFLEFPTQQGAQQVLEAYN----GQLIRLANT
Contig5166_subs   LIRDKNTMIPSGYGFVEFASHATAVKILENYN----GTPIPNA--
supercont1.7943   MINNRNTGMPAGYWY------------------------------
T.congo.pschr.9   VCRDIITQRSLGYGYVNYDNANSATKAMEEMN----FKRVERSTC
SECP43.HUMAN.gi   IIRNRLTGIPAGYCFVEFADLATAEKCLHKIN----GKPLPGATP

cons                                                           


gi|325183812|em   IHRFRLNWGAGGRRIDTVEDHSIFVGDLAPEVSDELLLSTFSTRF
Cf_Contig578_su   GNIFVKNLETEKYMQHQSLGNNLYVRNFDPEFTDADLLELFK-EY
gi|93569058|gb|   ------------------------------------------GRY
gi|328876102|gb   ---CRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFS-TY
scaffold_11_sub   KKTEESPEASEGKETDEPKGVNLYVKNLEDVVTDDMLRDEFA-AM
gi|340502518|gb   HVKYKINIIRY-ME------NNVMSSNLSISVS---------IQV
contig_35_subse   ---VRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFT-KF
Lt_contig3266_s   ---VRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKHLHDIFT-KF
PHYCAscaffold_1   MHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLSTFNARF
Contig5166_subs   GRSFRLNWATMGAN-SNSNEFAIYIGDLSADVTDTVLQNAFIQRY
supercont1.7943   ---------------------------------------------
T.congo.pschr.9   STRGKLHECLYY-MQCQSLGNNLYVRNFDPEFTEKDLNELFK-EY
SECP43.HUMAN.gi   AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY

cons                                                           


gi|325183812|em   SSVRGAKVVIDP-VTRMPKGFGFVRFGDKGEADQALQTMNGVY-C
Cf_Contig578_su   GNVKSCRVMMS--ESGASRGFGFVSFSDADEANAALREMNGRM-L
gi|93569058|gb|   PSVRSARVIMDS-ATGISRGYGFVKFASDVEKDKALIDMNGFY-I
gi|328876102|gb   GNILSCKIEY---EKGISKGYGYVHFENQESSEQAILKVNGTI-L
scaffold_11_sub   GTITSARIMKDMGKDGRSRGFGFVCFSSPEEATRAVNEMNGKL-I
gi|340502518|gb   SVL------KIH--KQKAEDLVLLSFLI-----------------
contig_35_subse   GSILSCKVMQD--EEGKSRGYGFVHFKDETSAKDAIVKMNGAA-D
Lt_contig3266_s   GAILSCKVMED--EEGKSRGYGFVHFKDETSAKDAIVKMNG----
PHYCAscaffold_1   TSVRGAKVVIDP-ITRMSKGFGFVRFGSKEEADQALQTMNGVY-C
Contig5166_subs   PSVKNAKVVTDP-VTGISKGYGFVRFIDENDKNRAMAEMQGQF-I
supercont1.7943   ---------------------------------------------
T.congo.pschr.9   GVIRSCRVMTD--ANGVSRGFGFVSFENADQANAALREMSGRM-L
SECP43.HUMAN.gi   PSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL

cons                                                           


gi|325183812|em   S-SRPMRVSVATDRTKTRAAGYYQQ-YPYQQ----TAYQN--AYG
Cf_Contig578_su   N-GKPLIV-------------------------------------
gi|93569058|gb|   N-NKPIKASFSTSYASLTTFASYATFASYASF---TSYA------
gi|328876102|gb   L-GKPIIVEPFVSKVERFKYLIYQQQYQQHLHQQYLQYQQQFPQQ
scaffold_11_sub   A-NKPIFVALAQRREVRRAQLEAQHA-----NRNQQQQQQQQPYG
gi|340502518|gb   -------------------------------H---K---------
contig_35_subse   HASEPRRGKATRSRFT-YKPISRSEAA------------------
Lt_contig3266_s   ---------------------------------------------
PHYCAscaffold_1   S-SRPMRVSVATERNKSRQQNYYNYSAAYGY----PQYQQ-GAYG
Contig5166_subs   G-ARPIRISGATPKSPMAKPAAASSSYNNHN----NNYYP---YS
supercont1.7943   ---------------------------------------------
T.congo.pschr.9   N-GKPLVV-------------------------------------
SECP43.HUMAN.gi   G-SKPVRLSVAIPKASRVKPVEYSQMYSYSYN---Q-YYQ-QYQN

cons                                                           


gi|325183812|em   YNYFPQG--YAQQP-------------------------------
Cf_Contig578_su   ---------------------------------------------
gi|93569058|gb|   --TF-TS--YATLT--------PYAT-------------------
gi|328876102|gb   YQQ-QLQQQQAQQK--------QYQQ-------------------
scaffold_11_sub   YQA-QGG--YQQQP--------QYGQ-------------------
gi|340502518|gb   -----------K--------VKQFKK-------------------
contig_35_subse   ---------AARVS--------LVEQ-------------------
Lt_contig3266_s   ---------------------------------------------
PHYCAscaffold_1   YAAY-GQ--YGQQG---------NQS-------------------
Contig5166_subs   YNH-APG--SFNNS--------NYDYT------------------
supercont1.7943   ---------------------------------------------
T.congo.pschr.9   ---------------------------------------------
SECP43.HUMAN.gi   YYA-QWG--YDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDP

cons                                                           


gi|325183812|em   -------------------------------------GSYAYN
Cf_Contig578_su   ----------------------------------------NIA
gi|93569058|gb|   -------------------------------------FASSYA
gi|328876102|gb   -------------------------------------YQHQLQ
scaffold_11_sub   --------------------------------------GSYGQ
gi|340502518|gb   -------------------------------------MGLFLE
contig_35_subse   -------------------------------------SNFFLQ
Lt_contig3266_s   ------------------------------------------A
PHYCAscaffold_1   -------------------------------------QGGYQQ
Contig5166_subs   -------------------------------------SYYNNY
supercont1.7943   ------------------------------------------V
T.congo.pschr.9   ----------------------------------------NIA
SECP43.HUMAN.gi   MPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM

cons