T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=80
*
BAD AVG GOOD
*
gi|325183812|em : 84
Cf_Contig578_su : 86
gi|93569058|gb| : 37
gi|338240694|gb : 79
contig_35_subse : 83
Lt_contig3266_s : 86
PHYCAscaffold_1 : 82
Contig5166_subs : 84
T.congo.pschr.9 : 86
SECP43.DROSO.gi : 79
cons : 80
gi|325183812|em -------LWMGDIQLNWDEAYIGSLFASAVEQ-PSIKLIRDKVTG
Cf_Contig578_su -----ASIYVGDLDATINEPQLVELFKSFGTI-LNVRVCRDIITQ
gi|93569058|gb| ---------------------------------------------
gi|338240694|gb --------------------------------------------G
contig_35_subse -----ASIYVGDLDAAINEPQLVELFKPFGTI-LNVRVCRDIITQ
Lt_contig3266_s -----ASIYVGDLDATINEPQLVELFKSFGTI-LNVRVCRDIITQ
PHYCAscaffold_1 -------LWMGDIQMHWDETFIASLFTTAVEQ-PVIKLIRDKVTG
Contig5166_subs -------LWVGDIEQWMDETYVMNLFSHVGEV-VNVKLIRDKNTM
T.congo.pschr.9 -----ASLYVGDLDPAISEPQLVEIFRPYGTI-LNVRVCRDIITQ
SECP43.DROSO.gi MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTG
cons
gi|325183812|em YPAGYGFLEFPSQQGAQAVLNTFNGQIVRTSNTIHRFRLNWGAGG
Cf_Contig578_su RSLGYGYVNFDNHDDAEKAIEAMNFKRVGD--KC--MRLMWQQRD
gi|93569058|gb| ---------------------------------------------
gi|338240694|gb RSKGYGFVHFESDEAAALAVDRVNGMKIGSKEPIC--RLRHDRSG
contig_35_subse RSLGYGYVNFDNHDSAEKAIESMNFKRVGD--KC--VRLMWQQRD
Lt_contig3266_s RSLGYGYVNFDNHESAEKAIESMNFKRVGD--KC--VRLMWQQRD
PHYCAscaffold_1 YPAGYGFLEFPTQQGAQQVLEAYNGQLIRLANTMHRFRMNWGAGG
Contig5166_subs IPSGYGFVEFASHATAVKILENYNGTPIPNAGRS--FRLNWATMG
T.congo.pschr.9 RSLGYGYVNYDNANSATKAMEEMNFKRVGE--KC--IRIMWQQRD
SECP43.DROSO.gi EPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIV--RFRLNSAS
cons
gi|325183812|em RRIDTV---EDHSIFVGDLAPEVSDELLLSTFSTRFSSVRGAKVV
Cf_Contig578_su PALRYS---GNGNIFVKNLETEVDSKSLHDIF-NKFGLILSCKVM
gi|93569058|gb| ----------DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVI
gi|338240694|gb GGIASRNRYEGVNLYIKNLSDSVDDAGLRALF-EAFGTITSAKVM
contig_35_subse PALRYS---GNGNVFVKNLEKDVDSKSLHDIF-TKFGSILSCKVM
Lt_contig3266_s PALRYS---GNGNVFVKNLEKDVDSKHLHDIF-TKFGAILSCKVM
PHYCAscaffold_1 RRIETS---DDHSIFVGDLAPDVTDELLLSTFNARFTSVRGAKVV
Contig5166_subs ANSKFASSSNEFAIYIGDLSADVTDTVLQNAFIQRYPSVKNAKVV
T.congo.pschr.9 PALRYS---GNGNVFVKNLKGEVDSRELSLIF-KKFGEILSCKVM
SECP43.DROSO.gi NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVI
cons ::: :* .* . * * : : .:*:
gi|325183812|em IDPVTRMPKGFGFVRFGDKGEADQALQTMNGV-YCSSRPMRVSVA
Cf_Contig578_su EDEE-GKSRGYGFVHFKDETSAKDAIVKMN---------------
gi|93569058|gb| MDSATGISRGYGFVKFASDVEKDKALIDMNGF-YINNKPIKINNS
gi|338240694|gb KDED-GHSKGFGFVCFTTPEEATKALAEM----------------
contig_35_subse QDEE-GKSRGYGFVHFKDETSAKDAIVKMNGSIYVGDLDAAINEP
Lt_contig3266_s EDEE-GKSRGYGFVHFKDETSAKDAIVKMN---------------
PHYCAscaffold_1 IDPITRMSKGFGFVRFGSKEEADQALQTMNGV-YCSSRPMRVSVA
Contig5166_subs TDPVTGISKGYGFVRFIDENDKNRAMAEMQGQ-FIGARPIRISGA
T.congo.pschr.9 DDES-GNSRGYGFVHFKDDNAAKSAIESMN---------------
SECP43.DROSO.gi LDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNA
cons * .:*:*** * *: *
gi|325183812|em TDRT-----------------------------------------
Cf_Contig578_su ---------------------------------------------
gi|93569058|gb| NINNNSNINNNNNVNNNNNNKPNGVSINNDKNNSSIYDPHYTYVP
gi|338240694|gb ---------------------------------------------
contig_35_subse ---------------------------------------------
Lt_contig3266_s ---------------------------------------------
PHYCAscaffold_1 TERNKSRQQRAEQDGCRPHGHGLGVAAGANSTFSL----------
Contig5166_subs TP-------------------------------------------
T.congo.pschr.9 ---------------------------------------------
SECP43.DROSO.gi VPKPKSELGGAVGEGNTNYGYGSGMTAAGGTDYSQYYDPTSTYWQ
cons
gi|325183812|em ---------------------------------------------
Cf_Contig578_su ---------------------------------------------
gi|93569058|gb| SYQAAYQSYQQQH----TQQQTTIQQQQNQQHQYQQQYQQLQQLQ
gi|338240694|gb ---------------------------------------------
contig_35_subse ---------------------------------------------
Lt_contig3266_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
Contig5166_subs ---------------------------------------------
T.congo.pschr.9 ---------------------------------------------
SECP43.DROSO.gi GYQAW-QGYYEQAGASITDAAAYYQQAMSQSHSNPQTLAQHAEAW
cons
gi|325183812|em ---------------------------------------------
Cf_Contig578_su ---------------------------------------------
gi|93569058|gb| QQQQQQQQQQQQ---------------------------------
gi|338240694|gb ---------------------------------------------
contig_35_subse ----------QL---------------------------------
Lt_contig3266_s ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
Contig5166_subs ---------------------------------------------
T.congo.pschr.9 ---------------------------------------------
SECP43.DROSO.gi SAQRSAQYEQQQQQQTASAANGAEDENGLVEHKFVLDVDKLNREA
cons
gi|325183812|em -----------------------KT
Cf_Contig578_su ------------------------G
gi|93569058|gb| -------------------QQQQQQ
gi|338240694|gb ------------------------H
contig_35_subse -------------------VELFKP
Lt_contig3266_s ------------------------G
PHYCAscaffold_1 ---------------------WSSP
Contig5166_subs ------------------------K
T.congo.pschr.9 ------------------------G
SECP43.DROSO.gi IDADRRLYDALESSKWLPIEQLEVF
cons