T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=80
*
 BAD AVG GOOD
*
gi|325183812|em   :  84
Cf_Contig578_su   :  86
gi|93569058|gb|   :  37
gi|338240694|gb   :  79
contig_35_subse   :  83
Lt_contig3266_s   :  86
PHYCAscaffold_1   :  82
Contig5166_subs   :  84
T.congo.pschr.9   :  86
SECP43.DROSO.gi   :  79
cons              :  80

gi|325183812|em   -------LWMGDIQLNWDEAYIGSLFASAVEQ-PSIKLIRDKVTG
Cf_Contig578_su   -----ASIYVGDLDATINEPQLVELFKSFGTI-LNVRVCRDIITQ
gi|93569058|gb|   ---------------------------------------------
gi|338240694|gb   --------------------------------------------G
contig_35_subse   -----ASIYVGDLDAAINEPQLVELFKPFGTI-LNVRVCRDIITQ
Lt_contig3266_s   -----ASIYVGDLDATINEPQLVELFKSFGTI-LNVRVCRDIITQ
PHYCAscaffold_1   -------LWMGDIQMHWDETFIASLFTTAVEQ-PVIKLIRDKVTG
Contig5166_subs   -------LWVGDIEQWMDETYVMNLFSHVGEV-VNVKLIRDKNTM
T.congo.pschr.9   -----ASLYVGDLDPAISEPQLVEIFRPYGTI-LNVRVCRDIITQ
SECP43.DROSO.gi   MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTG

cons                                                           


gi|325183812|em   YPAGYGFLEFPSQQGAQAVLNTFNGQIVRTSNTIHRFRLNWGAGG
Cf_Contig578_su   RSLGYGYVNFDNHDDAEKAIEAMNFKRVGD--KC--MRLMWQQRD
gi|93569058|gb|   ---------------------------------------------
gi|338240694|gb   RSKGYGFVHFESDEAAALAVDRVNGMKIGSKEPIC--RLRHDRSG
contig_35_subse   RSLGYGYVNFDNHDSAEKAIESMNFKRVGD--KC--VRLMWQQRD
Lt_contig3266_s   RSLGYGYVNFDNHESAEKAIESMNFKRVGD--KC--VRLMWQQRD
PHYCAscaffold_1   YPAGYGFLEFPTQQGAQQVLEAYNGQLIRLANTMHRFRMNWGAGG
Contig5166_subs   IPSGYGFVEFASHATAVKILENYNGTPIPNAGRS--FRLNWATMG
T.congo.pschr.9   RSLGYGYVNYDNANSATKAMEEMNFKRVGE--KC--IRIMWQQRD
SECP43.DROSO.gi   EPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIV--RFRLNSAS

cons                                                           


gi|325183812|em   RRIDTV---EDHSIFVGDLAPEVSDELLLSTFSTRFSSVRGAKVV
Cf_Contig578_su   PALRYS---GNGNIFVKNLETEVDSKSLHDIF-NKFGLILSCKVM
gi|93569058|gb|   ----------DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVI
gi|338240694|gb   GGIASRNRYEGVNLYIKNLSDSVDDAGLRALF-EAFGTITSAKVM
contig_35_subse   PALRYS---GNGNVFVKNLEKDVDSKSLHDIF-TKFGSILSCKVM
Lt_contig3266_s   PALRYS---GNGNVFVKNLEKDVDSKHLHDIF-TKFGAILSCKVM
PHYCAscaffold_1   RRIETS---DDHSIFVGDLAPDVTDELLLSTFNARFTSVRGAKVV
Contig5166_subs   ANSKFASSSNEFAIYIGDLSADVTDTVLQNAFIQRYPSVKNAKVV
T.congo.pschr.9   PALRYS---GNGNVFVKNLKGEVDSRELSLIF-KKFGEILSCKVM
SECP43.DROSO.gi   NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVI

cons                           ::: :*  .* .  *   *   :  :  .:*:


gi|325183812|em   IDPVTRMPKGFGFVRFGDKGEADQALQTMNGV-YCSSRPMRVSVA
Cf_Contig578_su   EDEE-GKSRGYGFVHFKDETSAKDAIVKMN---------------
gi|93569058|gb|   MDSATGISRGYGFVKFASDVEKDKALIDMNGF-YINNKPIKINNS
gi|338240694|gb   KDED-GHSKGFGFVCFTTPEEATKALAEM----------------
contig_35_subse   QDEE-GKSRGYGFVHFKDETSAKDAIVKMNGSIYVGDLDAAINEP
Lt_contig3266_s   EDEE-GKSRGYGFVHFKDETSAKDAIVKMN---------------
PHYCAscaffold_1   IDPITRMSKGFGFVRFGSKEEADQALQTMNGV-YCSSRPMRVSVA
Contig5166_subs   TDPVTGISKGYGFVRFIDENDKNRAMAEMQGQ-FIGARPIRISGA
T.congo.pschr.9   DDES-GNSRGYGFVHFKDDNAAKSAIESMN---------------
SECP43.DROSO.gi   LDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNA

cons               *     .:*:*** *        *:  *                


gi|325183812|em   TDRT-----------------------------------------
Cf_Contig578_su   ---------------------------------------------
gi|93569058|gb|   NINNNSNINNNNNVNNNNNNKPNGVSINNDKNNSSIYDPHYTYVP
gi|338240694|gb   ---------------------------------------------
contig_35_subse   ---------------------------------------------
Lt_contig3266_s   ---------------------------------------------
PHYCAscaffold_1   TERNKSRQQRAEQDGCRPHGHGLGVAAGANSTFSL----------
Contig5166_subs   TP-------------------------------------------
T.congo.pschr.9   ---------------------------------------------
SECP43.DROSO.gi   VPKPKSELGGAVGEGNTNYGYGSGMTAAGGTDYSQYYDPTSTYWQ

cons                                                           


gi|325183812|em   ---------------------------------------------
Cf_Contig578_su   ---------------------------------------------
gi|93569058|gb|   SYQAAYQSYQQQH----TQQQTTIQQQQNQQHQYQQQYQQLQQLQ
gi|338240694|gb   ---------------------------------------------
contig_35_subse   ---------------------------------------------
Lt_contig3266_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
Contig5166_subs   ---------------------------------------------
T.congo.pschr.9   ---------------------------------------------
SECP43.DROSO.gi   GYQAW-QGYYEQAGASITDAAAYYQQAMSQSHSNPQTLAQHAEAW

cons                                                           


gi|325183812|em   ---------------------------------------------
Cf_Contig578_su   ---------------------------------------------
gi|93569058|gb|   QQQQQQQQQQQQ---------------------------------
gi|338240694|gb   ---------------------------------------------
contig_35_subse   ----------QL---------------------------------
Lt_contig3266_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
Contig5166_subs   ---------------------------------------------
T.congo.pschr.9   ---------------------------------------------
SECP43.DROSO.gi   SAQRSAQYEQQQQQQTASAANGAEDENGLVEHKFVLDVDKLNREA

cons                                                           


gi|325183812|em   -----------------------KT
Cf_Contig578_su   ------------------------G
gi|93569058|gb|   -------------------QQQQQQ
gi|338240694|gb   ------------------------H
contig_35_subse   -------------------VELFKP
Lt_contig3266_s   ------------------------G
PHYCAscaffold_1   ---------------------WSSP
Contig5166_subs   ------------------------K
T.congo.pschr.9   ------------------------G
SECP43.DROSO.gi   IDADRRLYDALESSKWLPIEQLEVF

cons