T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:12 sec.
SCORE=82
*
 BAD AVG GOOD
*
gi|325181502|em   :  76
Cf_Contig741_su   :  83
gi|93569114|gb|   :  83
gi|328869808|gb   :  85
scaffold_30_sub   :  79
gi|340502432|gb   :  80
contig_34_subse   :  83
Lt_contig2959_s   :  82
PHYCAscaffold_1   :  78
Contig13961_sub   :  97
supercont1.106_   :  82
T.congo.pschr4_   :  82
eEFsec.Human.SP   :  83
cons              :  82

gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   LAAVMLNVNVGLLGHVDSGKTALAKALSRTASTAAFDKSPQSQSR
gi|93569114|gb|   -----INFNIGIMGHVDSGKTSLAKALSTNLSTASLDKSPASQER
gi|328869808|gb   S-SRILNINVGIMGHVDSGKTSLAKVLSTSLSTAALDKSPASQER
scaffold_30_sub   -----ININVGILGHVDSGKTSLVKTLSTLLSTASLDKSKQSRQR
gi|340502432|gb   ----------GVLGHIDSGKTSLSKALSKITSTASLDKNPS--ER
contig_34_subse   -----LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSR
Lt_contig2959_s   -----LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSR
PHYCAscaffold_1   -----LNVNVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQSQQR
Contig13961_sub   -----LNVNVGILGHVDSGKTSLARAISTLLSTAALDKSPASQER
supercont1.106_   --NKMLNINVGVLGHVDSGKTSLCKVLSTVASTASFDNNPQSQAR
T.congo.pschr4_   -----VNINIGILGHVDSGKTSLAKALSLTASTAAFDKSPESQRR
eEFsec.Human.SP   MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   GITLDLGFSACEVAQDDS----------DDARAVLRAANLDKVQC
gi|93569114|gb|   GITLDLGFSSFQIKKDKL----------AENN-NNNNDNNNNIQI
gi|328869808|gb   GITLDLGFSSFNVDVASHP--L------LSQR-SEIANHYDRVQF
scaffold_30_sub   GMTLDLGFSCFFMDLPERL--KLQLQASSNNKSKSKSNKLKYLQM
gi|340502432|gb   GITLDLGFSAFFTRNPEKF-------------R----ELKAEYLF
contig_34_subse   GITLDLGFSACEVSVEDGN---------ADATRVLREADLTKVQC
Lt_contig2959_s   GITLDLGFSACEVSIEDGN---------EDLTNVLRAADLTKLQC
PHYCAscaffold_1   GITLDLGFSSFLLKPSA--------------------QVKPCLQV
Contig13961_sub   GIT------------------------------------------
supercont1.106_   GITLDLGFSSFKRKTPSQLXXT--FYRVLTSPIALTAHGSDEVQF
T.congo.pschr4_   GITLDLGFSATCVSTESA-------------APALFALGLKHVQC
eEFsec.Human.SP   GITLDLGFSCFSVPLPARL--RSSLPEFQAAPEAEPEPGEPLLQV

cons                                                           


gi|325181502|em   --VDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILL
Cf_Contig741_su   TLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLVL
gi|93569114|gb|   TLVDCPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIVI
gi|328869808|gb   TLVDCPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAECIVI
scaffold_30_sub   TLVDCPGHASLIRTIIGGAQIIDIVLLVVDAYKGWQAQTTECLVL
gi|340502432|gb   TLVDCPGHASLIKTILGGASIIDIMFLVIDINKGIT--TAECLVI
contig_34_subse   TLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLIL
Lt_contig2959_s   TLVDCPGHASLIRTVVGGAQIIDVIVLVIDATKGMQVQTGECLVL
PHYCAscaffold_1   TLVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLL
Contig13961_sub   ---------------------------------------------
supercont1.106_   TLVDCPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAECIVV
T.congo.pschr4_   TFVDCPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIVI
eEFsec.Human.SP   TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI

cons                                                           


gi|325181502|em   ARQVGVPALVVFLNKVDQVDDEEL---LELV---EMEIRELLDL-
Cf_Contig741_su   GEVLAKP-LVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRR-
gi|93569114|gb|   GEITCKK-GIIILNKIDQIPVESRK---EKIEQVSSKLRKALEK-
gi|328869808|gb   GEITCKK-GIIILNKIDQIPQESRQ---SKIDTMSTKLRKVLEK-
scaffold_30_sub   AELTSST-LIIALNKIDMFPIAERE---QRLQEATQKVRERLKQS
gi|340502432|gb   AELLIK--LIVVLNKIDTIPIEKRE---EII-IKKKELQKVF-K-
contig_34_subse   GEVLAKP-LVVVLNKMDAIQGASPAAKEAALAALKRKLQQVFRR-
Lt_contig2959_s   GEVLAKP-LVVVLNKVDAIQGATPEAKVAALAALRRKLQQTFRR-
PHYCAscaffold_1   ATLIAKRSVVVALTKTDLVPSAERD---NVIGKCSHEVRSFMATN
Contig13961_sub   ---------------------------------------------
supercont1.106_   GEITCDR-MVVVLNKIDLVPEEERA---KKIAKMTSGMKITLQQ-
T.congo.pschr4_   GEVLNKP-LVVVINKIDAVQGLTQAEQRANLDKLRRRLRKTFER-
eEFsec.Human.SP   GQIACQK-LVVVLNKIDLLPEGKRQ---AAIDKMTKKMQKTLEN-

cons                                                           


gi|325181502|em   YDFP-SEEIPIIRGSALAAVEGRD----HPIGRDAVLQL-VEHVD
Cf_Contig741_su   TRW---PTVTVVEVAAAPRDVADG----SSSSSSGMAAP-YNVTL
gi|93569114|gb|   TCF---KDSLIIPFSATGGSSSGGGSNSNKIEPIGIDLL-TKELL
gi|328869808|gb   TCF---SQSPMVSVSANPGQQQPL----QPSQPIGLNQM-IDELC
scaffold_30_sub   TKFNDPSQVPIIGVSACMGGEKVA----AVAIDKAPSSS-TSSTI
gi|340502432|gb   TKF---GNVPIIPVSAVENENKNM-------------LL-ID-CL
contig_34_subse   TRW---PTVAIVEVAAAPRETEAV----LPQVLRAV----DLAAL
Lt_contig2959_s   TRW---PTVAIVEVAAAPLNTEAV----LPQVLRAV----DLAAL
PHYCAscaffold_1   FNFHDTSSIPVVPVAVGSNQDP-----------QGIPQL-LEALN
Contig13961_sub   ---------------------------------------------
supercont1.106_   TRF---KTVSVTSTSVLPGGEIVG----LDELVKHFYES-LQGLE
T.congo.pschr4_   TRW---PHVSMVEVSAAPRGGSAE----GDAAVGGHCVPINVDAM
eEFsec.Human.SP   TKF---RGAPIIPVAAKPGGPEAP----ETEAPQGIPEL-IELLT

cons                                                           


gi|325181502|em   NYIPDPVRDFEKPFLMPVEDVFSIAGRGTVVSGRVEHGVINAGDE
Cf_Contig741_su   KAAKAREGERPERFYMLVDHCFAVRGQGTVFTGTVVAGMVRVGDT
gi|93569114|gb|   NFINIPKREAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQI
gi|328869808|gb   KFIEIPKRDDQGTFLFEFDHCFQIKGQGSVLTGTVLKGSIEINQT
scaffold_30_sub   TKGSSTNSNSNSNFYFAIDHCFPIKGMGTVLTGTCLNGSINVNDI
gi|340502432|gb   LDIEIPKRNKDGPFYFLIDHCFPIKGKGSVITGTVIGS-HTSG-E
contig_34_subse   KSAKESEAERPAQFYMLVDHCFAVRGQGTVFTGTVVAGVVRVGDT
Lt_contig2959_s   KAAKESEFERPAQFYMLVDHCFPVRGQGTVFTGTVVAGVVRVGDT
PHYCAscaffold_1   ANLQVPERDHSGSFCLAVDHCFSVPGNGTILTGTVLSGALERGDE
Contig13961_sub   ---------------------------------------------
supercont1.106_   ESLSDLKRPQAAHFLFAIDHCFFIKGQGTVLTGTVLSGSVKAGDT
T.congo.pschr4_   KR-QRDAQHRPEDLVMMVDHCFALKGQGTVFTGTILRGKVSVGDS
eEFsec.Human.SP   SQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDS

cons                                                           


gi|325181502|em   VELVGIRSTPTKTTCTGVEMFKKQLDRGQAGDNVGLLLRGLKRDD
Cf_Contig741_su   VLVPDLQ---TTRKVKGLQVFHQPVETARSGDRVGLCVAQFDPAS
gi|93569114|gb|   IQIPQLN---IEKKVKSMQMFHKPIKKAIQGDRVGVCITQLDSSL
gi|328869808|gb   VQIPQLN---LEKKIKSMQMFHKPVKKVVQGDRAGICVTQLDSKL
scaffold_30_sub   IEFPSLGN--LQRKVKSIQMFKRRCLKIQQGDRAGICVSNFDSTS
gi|340502432|gb   VEFPLI-K---TKKSKSMQMFKKPVNI--IGDRAAILF-TLDHNL
contig_34_subse   VLVPELQ---TTRKVKGLQVFHKPVEMAQSGDRVGLCVAQFDPTW
Lt_contig2959_s   VLVPEMQ---TTRKVKGLQMFHKPVESAKSGDRVGLCVAQFDPAW
PHYCAscaffold_1   LELLPLG---AKVKVKTLQVFKKDVAKCSQGDRVGLRVNGLDPAL
Contig13961_sub   ---------------------------------------------
supercont1.106_   VEIPSLK---IKKKVKSLQMFRQPVDGLAQSDRGAILVTQFDAKL
T.congo.pschr4_   ILIPESQ---VVKKVKGLQVFRKPVQCAGQGDRVGLSVVQFDADG
eEFsec.Human.SP   VEIPALK---VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL

cons                                                           


gi|325181502|em   VMRGQVVCKPG-S---H----------------------------
Cf_Contig741_su   MERGV-LCSSAGSERTLVSTSQLIAQVHKV-RYHP-FLADTHTKF
gi|93569114|gb|   LERGL-VCSN-NS---IPLLSSALISIEKV-RFYK-QQVNSKQQF
gi|328869808|gb   LERGL-LCTP-KT---VPLLNGAIISIEKV-RFYK-NLVKTNSHF
scaffold_30_sub   LERGV-CSTP-GS---VKYVKGGIALVRKIIPHYKGPYLKNKSKY
gi|340502432|gb   IERGI-ACTPG-I---A-FTKYSIIPVNKV-NYFK-YPIKSKGKY
contig_34_subse   MERGV-LCSAASSGRALVSSSQLIARVHRV-RYHP-LPCDTHTKF
Lt_contig2959_s   MERGV-LCSAASSGRMLMSSSQLIARVHRV-RYHP-LPCDTHTKF
PHYCAscaffold_1   VERAL-AVSPPGS---LTPVTQVVIPVTKV-PFFHEISCKSGGKC
Contig13961_sub   ---------------------------------------------
supercont1.106_   LERGY-ACTEG-S---IPTAYAMICTANRV-RIYK-PELKSGTKF
T.congo.pschr4_   MERGL-LCSAAA----FESVSTLIAEVSRV-RFHQ-LACTIHTKF
eEFsec.Human.SP   LERGL-VCAPE-S---LHTVHAALISVEKI-PYFR-GPLQTKAKF

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   HI-----------TIGHATVMGTMRYFSRPHVSAA----------
gi|93569114|gb|   HI-----------TIGHSTVIGTITLFSSNII-------------
gi|328869808|gb   HVLLTHKILFKIVTIGHTTTTAIVTFFGNKILDQSTP--------
scaffold_30_sub   HV-----------SVGHSTVMATVSFWDWKE--------------
gi|340502432|gb   HI-----------TTCHFTCMGSIKLFKHEINIEEKELESIKVNI
contig_34_subse   HI-----------TIGHATVMGTMRYFARPPRANE----------
Lt_contig2959_s   HI-----------TIGHATRMGTMRYFARPPCMSE----------
PHYCAscaffold_1   HV-----------TVGHTTIIAMATFFTCLVCPASI---------
Contig13961_sub   ---------------------------------------------
supercont1.106_   HV-----------SVGHQTVMAEAQFFGIVD--------------
T.congo.pschr4_   HI-----------TIGHSTVMGSMRFFSRPTVTEA----------
eEFsec.Human.SP   HI-----------TVGHETVMGRLMFFSPAP--------------

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   --------AGGSGDTFDPSVESAYVEELGEAAVATYSTLQSSTDS
gi|93569114|gb|   -------------EPFNSIKEYIYEDTLHATTINTSSNDNNTINS
gi|328869808|gb   ---TTK-EETGSIHQFNEKIEYSFMEYLEPTSL------------
scaffold_30_sub   ---DFL-LQDGLVDSLTKDNEHDASLGGVSSTKTNGSNGNDQDNN
gi|340502432|gb   NFDEGGKKKGGYI--FDFN-KYEYVECYDEY--------------
contig_34_subse   ----SL-DVPGTGASFDPSIESTYVEELDDGVVASYTS---TDTT
Lt_contig2959_s   ----GL-DVPGAVASFDSSIESAYVEELDDSVVASYSS---TDAT
PHYCAscaffold_1   -------RAGGFLSS----------------------KDACGVFT
Contig13961_sub   ---------------------------------------------
supercont1.106_   ---DGG-TDEGSSGDFTFDRDYIHLANYAEIRCKPCMSS--FQPV
T.congo.pschr4_   -----------AAQPFDLTQESEYVESLGEEAYLTFEAP--VEEL
eEFsec.Human.SP   ---DNF-DQEPILDSFNFSQEYLFQEQYLSKDLTPAVTD--NDEA

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   AAVAGRPLPIGAAA-SDFYAVLLLERPVLAAVGNAMVAMRLDVER
gi|93569114|gb|   NNVEN--KESFYPV-GSQFALIKFDHPILCPLNSVVIGSKLDVNL
gi|328869808|gb   ----------EYPV-GSQFALIKFDHPVLCPLESVIIGSKLDVAL
scaffold_30_sub   GTIKN--NKQKQPESLLHWAILDFQTPVYCPLQSLIIGSRLDAPV
gi|340502432|gb   ----------IKKA-DELFALIEFEKEMYASAGTLFICSKFDTDV
contig_34_subse   ASVPGRPLPVAPAE-QDYYAVLLLERPVLAAPGVSMIAMRLDVER
Lt_contig2959_s   ACVPGRPLPVAQAG-QDYYAVLLLERPVLAAPGVSMIAMRLDVER
PHYCAscaffold_1   NGSRRQALPVSIGFLWSYFVEFD----------------------
Contig13961_sub   ---------------------------------------------
supercont1.106_   RSNVGDAQRVSFVP-ADIYVLLNLAQPLLCPPDSLYIASRLDADI
T.congo.pschr4_   KREAGAPVAVKYGP-LTYFAIVLLEKPVMAAVGTPLIATRLDVEQ
eEFsec.Human.SP   DKKAGQAT-EGHCP-RQQWALVEFEKPVTCPRLCLVIGSRLDADI

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   D-NFCRIALAGSVC-------------------------------
gi|93569114|gb|   DSTGCRIAFHGNLLEGIDDTNKQ-SLFSKLKIYKNKSKQGQVERI
gi|328869808|gb   DTSGCRIAFHGSLLQGIDASNRQ-ILHDTLRIFKTKVKEGAVERV
scaffold_30_sub   EASSCRLAFCGRLIERLTDPSKD---IHKIRWYTPKEKRGIVSRL
gi|340502432|gb   SSNLCRLGFYGNALVALVQGDFNK--DKKLKIFREKTREGTVEKV
contig_34_subse   E-NFCRIALAGTVC-------------------------------
Lt_contig2959_s   E-NFCRIALAGTVC-------------------------------
PHYCAscaffold_1   ---------------------------------------------
Contig13961_sub   ---------------------------------------------
supercont1.106_   NSKAVRLAFHGRISSLMASPKYKADTLPRLLIYKRKFREGTVDRI
T.congo.pschr4_   D-NMCRIAIAGSVRALLHDEKADGASWRSLPIIRYKTRTLVVERV
eEFsec.Human.SP   HTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERA

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   HNENTIIGKNLFKKDSDISSFIGMKVL-FET-GEIGILDSSFGKT
gi|328869808|gb   HSEDTLIGKNLFSKQTDLSSFIGMKVV-FEN-GTVGVIDSSFGKT
scaffold_30_sub   AVRYELYGSDLFKKETLLKPFLGMKLITYPS-NDIGELKSAFGTS
gi|340502432|gb   CDGFTIIIKDMFKKETKIELFLNKSIY-IENFGNVGKI-CAFGKS
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
Contig13961_sub   ---------------------------------------------
supercont1.106_   VNANSLIGRGLFKKETNIKIFTGMKVT-LST-GENGFIDGAFGQS
T.congo.pschr4_   VSDRSCIASGVVTVEKHVQKFIGLRVH-FRP-TGEGTIDSAFGKT
eEFsec.Human.SP   MDDYSVIGRSLFKKETNIQLFVGLKVH-LST-GELGIIDSAFGQS

cons                                                           


gi|325181502|em   ---------------------------------------------
Cf_Contig741_su   ---------------------------------------------
gi|93569114|gb|   GKVKIQIQ----------TGVWKFQ--------------------
gi|328869808|gb   GKIRILIL----------PGTL-----------------------
scaffold_30_sub   GKFRVVFP----------SGTTAKENDIL-R--------------
gi|340502432|gb   GKIKALFS----------N--------------------------
contig_34_subse   ---------------------------------------------
Lt_contig2959_s   ---------------------------------------------
PHYCAscaffold_1   ---------------------------------------------
Contig13961_sub   ---------------------------------------------
supercont1.106_   GKFSVGLWSAFHPKVQIPGGLSEDTLNNLGNKGKKKGS----DAV
T.congo.pschr4_   GKVKLIFN----------EPYKTRLKKRMTPVPLKKDRIRREERL
eEFsec.Human.SP   GKFKIHIP----------GGLSPESKKILTPALKKRARAGRGEAT

cons                                                           


gi|325181502|em   ---------------------------------VPH
Cf_Contig741_su   -----------------------------------H
gi|93569114|gb|   --------------------------------TKIL
gi|328869808|gb   --------------------------------PPQT
scaffold_30_sub   -------------------------------LPFKR
gi|340502432|gb   ----------------------------------GI
contig_34_subse   -----------------------------------H
Lt_contig2959_s   -----------------------------------H
PHYCAscaffold_1   -------------------------------LEPCM
Contig13961_sub   -----------------------------------L
supercont1.106_   K-------KNENSPVTINLSFKKYTYDAS--GRMVQ
T.congo.pschr4_   RK------------------------ERA--ARAAE
eEFsec.Human.SP   RQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQSP

cons