T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=96
*
BAD AVG GOOD
*
scaffold_2_subs : 96
OPtRNAsecMUS.gi : 96
cons : 96
scaffold_2_subs ---------------------------------------------
OPtRNAsecMUS.gi MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
cons
scaffold_2_subs ------------------------CGVGEREGRVFSSLVSQRHYG
OPtRNAsecMUS.gi WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
cons ********** *:**::***
scaffold_2_subs LSHGMGRSGDITEPQPKAAGSSALVKLALLLTLDALRRGSKLDAK
OPtRNAsecMUS.gi FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIK----LAGV
cons : **:******: ******** * *:: *.*:.:: * .
scaffold_2_subs GPAAYGILLPLCTGMSISLLLASIRSKEENSETKKDIVLWSRIDQ
OPtRNAsecMUS.gi HSVASCFVVPMATGMSLTLCFLTLRHKRP----KAKYIIWPRIDQ
cons ..* :::*:.****::* : ::* *. * . ::*.****
scaffold_2_subs KSCFKAIHSAGLICVVVPTKIEGDEVITDIDAMEAALSKH-EGRV
OPtRNAsecMUS.gi KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI
cons *****:: :**: **: . :****: **:.*:** :.: ::
scaffold_2_subs LAVITTSSCFTPRVPDAVDKVAKLCKVSNVYHIINNAYGLQCAKT
OPtRNAsecMUS.gi LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC
cons *.: :*::**:***** ::::* :* :: *::*******.:*
scaffold_2_subs SKLINRACVVGRVDAVVCSTDKNFLVPVGGAIIISPSKNIIGEVG
OPtRNAsecMUS.gi MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS
cons :**::.. ***:**.* * ****:******** . .: :* ::.
scaffold_2_subs KVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTSVLETFPERL
OPtRNAsecMUS.gi KMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL
cons *:*.****:** :*::*****:* .**::*****..:: :. :*
scaffold_2_subs REVAEKHGERILVCPNNTVSFGLTLDGLARPKEVEITSFGAMLFS
OPtRNAsecMUS.gi KKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFT
cons :::** *.**:* *:*.:*:.:**. : :: :*.:*:***:
scaffold_2_subs RCVSGTRVVPRSQLKSIGGQDFIGFGSSTNEYPHAYMTAACAIGV
OPtRNAsecMUS.gi RQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGM
cons * ***:*.** .:::::.*: * ** * :::** **:.**.***:
scaffold_2_subs SIFEIEEFYVRLDKTLTEFKRKKK---------------------
OPtRNAsecMUS.gi KMQDVDLFIKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEM
cons .: ::: * **** *. .::::.
scaffold_2_subs ----------------K
OPtRNAsecMUS.gi ALKLDDVLGDVGQGPAL
cons