T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:7 sec.
SCORE=94
*
 BAD AVG GOOD
*
Cf_Contig1068_s   :  95
gi|93569092|gb|   :  95
gi|328872098|gb   :  94
scaffold_2_subs   :  93
gi|340503345|gb   :  90
contig_09_subse   :  96
Lt_contig6577_s   :  95
PHYCAscaffold_5   :  96
Contig19987_sub   :  95
supercont1.837_   :  95
T.congo.pschr.1   :  94
OPtRNAsecMUS.gi   :  95
cons              :  94

Cf_Contig1068_s   MDERGLQLAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVG
gi|93569092|gb|   ------------------------------------KKKKLPNIG
gi|328872098|gb   ---------------------------------------RLPDKG
scaffold_2_subs   ---------------------------------------------
gi|340503345|gb   ------------ISPQYIKS-QNSFQTFSNTIKILLSRQLFPH-P
contig_09_subse   MDDRSLKLAEDFVSARYIEAGRESLRATARIMRSILAQRCCPDEG
Lt_contig6577_s   MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEA
PHYCAscaffold_5   MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEG
Contig19987_sub   ---------------------------------------------
supercont1.837_   MNKPNYKLAEGLVPANYVRQAVESRNTRENLVKTVLSQRRLPVGG
T.congo.pschr.1   MDERALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEG
OPtRNAsecMUS.gi   MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG

cons                                                           


Cf_Contig1068_s   LSDAVIQLLLRQLAAMDTNNFAAHVGGGEREGRVASALVRQRHFD
gi|93569092|gb|   YNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYG
gi|328872098|gb   WDDQFIRWFLNDIAKMDSNNYVENAGVGEREGRIHSRIVQERHFG
scaffold_2_subs   ------------------------CGVGEREGRVFSSLVSQRHYG
gi|340503345|gb   LPDLEIELLISQLSLMDTNNFSQKIGVGEREGRIIS-IVQKRHFY
contig_09_subse   LTDAAIELILRQLSLMDTNNLAHHVGGGEREGRVVSALVRMRHFH
Lt_contig6577_s   LTDAAIELILRQLSLMDTNNFAHHVGGGEREGRVVSALVRMRHFH
PHYCAscaffold_5   WDDASVEMLLQTLSAMDSNNFQGSAGAGEREARVFSPMVARRHFR
Contig19987_sub   ---------------------------------------------
supercont1.837_   WDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLVRDMHNG
T.congo.pschr.1   LNDCAIELLLHQIAMMDTNNFTAHVGAGEREGRVASTLVQRRYYN
OPtRNAsecMUS.gi   WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR

cons                                                           


Cf_Contig1068_s   FTHGIGRSGDLASEQPKAAGSSLLYKLTNIMVLDLIRLAGAP---
gi|93569092|gb|   FAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLE-Q-
gi|328872098|gb   LAHGIGRSGDISEQQPKAAGSSLVQRLCSYLVMDSMSVAGLN---
scaffold_2_subs   LSHGMGRSGDITEPQPKAAGSSALVKLALLLTLDALRRGSKLDAK
gi|340503345|gb   MSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKDMLKLVGLC---
contig_09_subse   LTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLIRQAGAP---
Lt_contig6577_s   LTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLLRQAGAP---
PHYCAscaffold_5   LAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMR---
Contig19987_sub   ---------------------------------------------
supercont1.837_   MGHGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGAT---
T.congo.pschr.1   LTHGVGRSGDICSDQPKAAGSSLLYKLTNHMVLDLLRQAGTP---
OPtRNAsecMUS.gi   FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH---

cons                                                           


Cf_Contig1068_s   -STAAAVVVPMATGMTLALVLRCVAKTR----VKERYVVWPRIDQ
gi|93569092|gb|   SSLSNCLLLPMATGMTLALTMLTLKSIN---ANNKRYVLWPRIDQ
gi|328872098|gb   -SIGECLVLPMATGMTIALTLMTFTKHC--RPPTAKYVIWPRIDQ
scaffold_2_subs   GPAAYGILLPLCTGMSISLLLASIRSKEENSETKKDIVLWSRIDQ
gi|340503345|gb   KKSRNLLILPAATGMACFLTLMALKKNI----SEKKYVIWSRIDQ
contig_09_subse   -STAAAVVVPMATGMTLALVLRCVAKTH----ATPRYVIWPRIDQ
Lt_contig6577_s   -STAAAVVVPMSTGMTLALVLRCVAKSR----TEERYVIWPRIDQ
PHYCAscaffold_5   -AVQAALVLPVATGMSLTLVLLQLNELK----PGAHYVIWPRIDQ
Contig19987_sub   ---------------------------------------------
supercont1.837_   -RTKSCYVFPLATGMAVVMCLLALKAKN----PTATHVVWPRIDQ
T.congo.pschr.1   -SLASAAVIPMATGMTISLVLRSIAHHR----DPPRFVIWTRVDQ
OPtRNAsecMUS.gi   -SVASCFVVPMATGMSLTLCFLTLRHKR----PKAKYIIWPRIDQ

cons                                                           


Cf_Contig1068_s   KTALKCIDSAGLLPLPVEL----------HCDVEDIAATINAVGG
gi|93569092|gb|   KSCLKSIITAGLIPIVIPNQL---DGDMIRTDLVAIEDKIKEL-G
gi|328872098|gb   KSCLKAIATAGLVPVVIENVL---QGDVITTDLEAIENKIIEL-G
scaffold_2_subs   KSCFKAIHSAGLICVVVPTKI---EGDEVITDIDAMEAALSKHE-
gi|340503345|gb   KTCLKCILAANLEPYVLELVI----GDKLCSDVEKLGKLLENN-D
contig_09_subse   KTALKCIDAAGLVPVPTPTSS---SSLFLECHVDDVAAAVNAVGG
Lt_contig6577_s   KTALKCIDAAGLIPVPVQLRP---AVTLARSADPWVSANRDSL-G
PHYCAscaffold_5   KSCFKSILAAGLTPLVLPNVLVEEEGGYLKTDLAGMAELIDQY-G
Contig19987_sub   ---------------------------------------------
supercont1.837_   KTCLKAIVATGFIPVVIENIT---EDNELRTDLPAIEDAIKRAGG
T.congo.pschr.1   KTALKCIELSGFIPVVVPLRR---ASVFLQAHVDDVAASIERVGG
OPtRNAsecMUS.gi   KSCFKSMVTAGFEPVVIENVL---EGDELRTDLKAVEAKIQEL-G

cons                                                           


Cf_Contig1068_s   PAHVVCVLSTTSCFAPRLPDNTVAIARYCKEHAIPYVVNNAYGVQ
gi|93569092|gb|   VDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQ
gi|328872098|gb   PENVVCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQ
scaffold_2_subs   -GRVLAVITTSSCFTPRVPDAVDKVAKLCKVSNVYHIINNAYGLQ
gi|340503345|gb   FKKVLCVFSTTSCFAPRIPDNITEIGRICFVNNIPHIVNNAYGLC
contig_09_subse   PSQVVCVLSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVNNAYGVQ
Lt_contig6577_s   RDKVVCVLSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQ
PHYCAscaffold_5   ADSILAVMSTTSCFAPRAYDSVQEIAKMCQDRNIAHVINNAYGVQ
Contig19987_sub   -------------------------------------VNNAYGLQ
supercont1.837_   PEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNAYGVT
T.congo.pschr.1   PTNVLCVLSTTSCFAPH-------------------------RVQ
OPtRNAsecMUS.gi   PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ

cons                                                         : 


Cf_Contig1068_s   SRRIMTRID-AAQ---RLGRVDYVVQSSDKNFLVPVGGAVVTSSS
gi|93569092|gb|   CSKILHNIS-QAC---KLGRVDAFIQSTDKNFMVPVGGAIISGPN
gi|328872098|gb   CSKIVHAIN-ESCQSDKQRRVDAIIQSTDKNYMVPVGGAIITSPK
scaffold_2_subs   CAKTSKLIN-RAC---VVGRVDAVVCSTDKNFLVPVGGAIIISPS
gi|340503345|gb   A-KIVNLINETYS---KNHRIDAIISSTDKNFLVPVGGAIIYGEN
contig_09_subse   SRRIMTRLD-AAQ---RLGRVDFVVQSGDKNFLVPVGGSIICSGD
Lt_contig6577_s   SRRIMTRLD-AAQ---RLGRVDFVVQSGDKNFLVPVGGSIISSSD
PHYCAscaffold_5   ASKCVHEVE-LAM---RVGRVDAVVQSLDKNFMVPVGGAIVCSAS
Contig19987_sub   DHAVCQGIT-QAA---KKGRIDAIIQSTDKNFMVPVGGAIIAGPD
supercont1.837_   SSLIMHHVN-EAM---RLGRVDAYVQSTDKNFLVPVGGSVIAGPD
T.congo.pschr.1   SRSIMQRID-AAI---RLGRVDAIVQSGDKNFLVPVGGAVLSGGR
OPtRNAsecMUS.gi   SSKCMHLIQ-QGA---RVGRIDAFVQSLDKNFMVPVGGAIIAGFN

cons                     :           *:*  : * ***::*****::: .  


Cf_Contig1068_s   AER-CNAAAALYAGRASASPIIDLFITALSLGRRGMQELWAERYR
gi|93569092|gb|   SEF-IDQISRNYPGRANSSPILDVFITLLSMGKQGWLNLLKERKE
gi|328872098|gb   KEK-QQHKQKNYPGRANGSPILDLFITLLSMGRQGYKELLDERKQ
scaffold_2_subs   KNI-IGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTS
gi|340503345|gb   K-L-IKEINENYPGRASLSPIIDLFITFLSTGREKWE-LLNIRKE
contig_09_subse   KER-CKAVAALYAGRASMSPIVDLFITALSLGRRGMQTLWSDRYK
Lt_contig6577_s   KAR-CQAVAALYAGRASMSPIVDLFITALSLGRRGMQALWSDRYR
PHYCAscaffold_5   RDL-VDRVAKFYPGRASATPTLDFFITMLQMGKSGYRQLLDERKH
Contig19987_sub   EKF-MNAIAKNYPGRASGSPVLDLFITLISLGRDGYEKLLHERKE
supercont1.837_   KHLKVADVCKTYPGRASGTPTLDVFITLLSMGSNGYKHRLLQRKE
T.congo.pschr.1   TE--VARATSLYAGRASASPVVDLFITALSLGRSGFQRLWDARYF
OPtRNAsecMUS.gi   EPF-IQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKE

cons                         *.***. :* :*.:** :. *          *  


Cf_Contig1068_s   CRRRLVDQLCGFAKARG-EVV------------------------
gi|93569092|gb|   LLIYFNEQLSKFALENN-EKLLNTINENKISFALTLSSNNFNN--
gi|328872098|gb   LLTYFRDQLASLSLQFPNCRLLDTP-DNRISLGLALAVASGDQQK
scaffold_2_subs   VLETFPERLREVAEKHG-ERILVCP-NNTVSFGLTLDGLARP-KE
gi|340503345|gb   NLIYLKEKLNVLL-KYE-ERVLST--ENSISVGFTLKNIK-N-KN
contig_09_subse   CRARLIRQLRVFARERR-EVL------------------------
Lt_contig6577_s   CRARLIRQLREFARERR-EVL------------------------
PHYCAscaffold_5   LAVYMREKLESLAAEEG-ERVLRVS-SNEVLVGC-----------
Contig19987_sub   MYNYLKEKMSAIAKKYG-ERLLLTP-HNPV---------------
supercont1.837_   IYEILKQKMSEVAAKHG-ERLLHTP-HNPISLAITITPRRRA-SS
T.congo.pschr.1   LRELLEQRLRDFARARE-ETL------------------------
OPtRNAsecMUS.gi   MFVYLSTQLKKLAEAHN-ERLLQTP-HNPISLAMTLKTIDGH-HD

cons                  :  ::  .        :                        


Cf_Contig1068_s   ---------------------------------------------
gi|93569092|gb|   ---------------------------------------------
gi|328872098|gb   LSISMIGSKLFSRSCSGARVIELPGSKKSVAGLDFESYGSHINNY
scaffold_2_subs   VEITSFGAMLFSRCVSGTRVVPR-SQLKSIGGQDFIGFGSSTNEY
gi|340503345|gb   ISILELGGILYNKRIMGGRIIIN-NEKVLKIDNLFKNYGCSNDFY
contig_09_subse   ---------------------------------------------
Lt_contig6577_s   ---------------------------------------------
PHYCAscaffold_5   ---------------------------------------------
Contig19987_sub   ---------------------------------------------
supercont1.837_   QNVTRLGAMLFRRGVSGARVVSA-DDVKVVAGVSFKGYGAHADAY
T.congo.pschr.1   ---------------------------------------------
OPtRNAsecMUS.gi   KAVTQLGSMLFTRQVSGARAVPL-GNVQTVSGHTFRGFMSHADNY

cons                                                           


Cf_Contig1068_s   ---------------------------------------------
gi|93569092|gb|   --------------------------NE-----------------
gi|328872098|gb   H-SSYLTVACAIGITKDDIDTFMKRLKK-----------------
scaffold_2_subs   P-HAYMTAACAIGVSIFEIEEFYVRLDKTLTE-------------
gi|340503345|gb   TELPYMTVACAIGMEKKEIDMFLIKLEG-----------------
contig_09_subse   ---------------------------------------------
Lt_contig6577_s   ---------------------------------------------
PHYCAscaffold_5   ---------------------------------------------
Contig19987_sub   ---------------------------------------------
supercont1.837_   F-TPYLTVAAALGMTRKDVEQVVERIDK-----------------
T.congo.pschr.1   ---------------------------------------------
OPtRNAsecMUS.gi   P-CAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASVVSG

cons                                                           


Cf_Contig1068_s   ------------------------------L
gi|93569092|gb|   -----------------------------EI
gi|328872098|gb   -----------------------------IL
scaffold_2_subs   ------------------------FKRKKKK
gi|340503345|gb   -----------------------------IN
contig_09_subse   ------------------------------L
Lt_contig6577_s   ------------------------------L
PHYCAscaffold_5   -----------------------------VL
Contig19987_sub   ------------------------------S
supercont1.837_   -----------------------------TL
T.congo.pschr.1   ------------------------------L
OPtRNAsecMUS.gi   ADRNKAEDADIEEMALKLDDVLGDVGQGPAL

cons