T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=99
*
BAD AVG GOOD
*
PHYCAscaffold_5 : 99
OPtRNAsecMUS.gi : 99
cons : 99
PHYCAscaffold_5 MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEG
OPtRNAsecMUS.gi MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
cons **.:* * .*: :..:**:** * *::* *: ** * : *::*
PHYCAscaffold_5 WDDASVEMLLQTLSAMDSNNFQGSAGAGEREARVFSPMVARRHFR
OPtRNAsecMUS.gi WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
cons **::::*::*: *:.****** *..*.****.** *.:*****:*
PHYCAscaffold_5 LAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMRAVQ
OPtRNAsecMUS.gi FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA
cons : **:*****::************ :::***. :*::***:::*
PHYCAscaffold_5 AALVLPVATGMSLTLVLLQLNELKPGAHYVIWPRIDQKSCFKSIL
OPtRNAsecMUS.gi SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV
cons :.:*:*:******** :* *.. :* *:*:*************::
PHYCAscaffold_5 AAGLTPLVLPNVLVEEEGGYLKTDLAGMAELIDQYGADSILAVMS
OPtRNAsecMUS.gi TAGFEPVVIENVL---EGDELRTDLKAVEAKIQELGPEHILCLHS
cons :**: *:*: *** **. *:*** .: *:: *.: **.: *
PHYCAscaffold_5 TTSCFAPRAYDSVQEIAKMCQDRNIAHVINNAYGVQASKCVHEVE
OPtRNAsecMUS.gi TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ
cons **:*****. * ::*:* :* : :*.**:*****:*:***:* ::
PHYCAscaffold_5 LAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAKFYPG
OPtRNAsecMUS.gi QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG
cons . ****:**.****************:.. .. ::: ::*:***
PHYCAscaffold_5 RASATPTLDFFITMLQMGKSGYRQLLDERKHLAVYMREKLESLAA
OPtRNAsecMUS.gi RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAE
cons ****:*:**.:**:*.:* ****:**.***.: **: :*:.**
PHYCAscaffold_5 EEGERVLRVSSNEVL------------------------------
OPtRNAsecMUS.gi AHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSG
cons ..**:*:.. * :
PHYCAscaffold_5 ---------------------------------------------
OPtRNAsecMUS.gi ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDV
cons
PHYCAscaffold_5 ---------------------------------------------
OPtRNAsecMUS.gi DLFIKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEMALKLD
cons
PHYCAscaffold_5 -------VGCVL
OPtRNAsecMUS.gi DVLGDVGQGPAL
cons * .*