T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=98
*
BAD AVG GOOD
*
Contig19987_sub : 98
OPtRNAsecMUS.gi : 98
cons : 98
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
cons
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
cons
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA
cons
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV
cons
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA
cons
Contig19987_sub -------------------------VNNAYGLQDHAVCQGITQAA
OPtRNAsecMUS.gi CFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA
cons ********. : * *.*
Contig19987_sub KKGRIDAIIQSTDKNFMVPVGGAIIAGPDEKFMNAIAKNYPGRAS
OPtRNAsecMUS.gi RVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRAS
cons : *****::** *************** :* *:: *:* ******
Contig19987_sub GSPVLDLFITLISLGRDGYEKLLHERKEMYNYLKEKMSAIAKKYG
OPtRNAsecMUS.gi ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHN
cons .** **::***:*** .**.***:*****: **. ::. :*: :.
Contig19987_sub ERLLLTPHNPV----------------------------------
OPtRNAsecMUS.gi ERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARA
cons **** *****:
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi VPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLF
cons
Contig19987_sub ---------------------------------------------
OPtRNAsecMUS.gi IKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEMALKLDDVL
cons
Contig19987_sub --------S
OPtRNAsecMUS.gi GDVGQGPAL
cons