T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=98
*
BAD AVG GOOD
*
Cf_Contig1068_s : 98
OPtRNAsecMUS.gi : 98
cons : 98
Cf_Contig1068_s MDERGLQLAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVG
OPtRNAsecMUS.gi MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
cons *: ..: .* **. *: * *: :* : :* *: * :**: *
Cf_Contig1068_s LSDAVIQLLLRQLAAMDTNNFAAHVGGGEREGRVASALVRQRHFD
OPtRNAsecMUS.gi WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
cons .::.::*:*::**.**:*** .: * ************ :**:
Cf_Contig1068_s FTHGIGRSGDLASEQPKAAGSSLLYKLTNIMVLDLIRLAGAPSTA
OPtRNAsecMUS.gi FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA
cons * ********::: ********** *:** :**::*:***. *.*
Cf_Contig1068_s AAVVVPMATGMTLALVLRCVAKTRVKERYVVWPRIDQKTALKCID
OPtRNAsecMUS.gi SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV
cons :..********:*:* : : :.* * :*::*******:.:*.:
Cf_Contig1068_s SAGLLPLPVE-------LHCDVEDIAATINAVGGPAHVVCVLSTT
OPtRNAsecMUS.gi TAGFEPVVIENVLEGDELRTDLKAVEAKIQEL-GPEHILCLHSTT
cons :**: *: :* *: *:: : *.*: : ** *::*: ***
Cf_Contig1068_s SCFAPRLPDNTVAIARYCKEHAIPYVVNNAYGVQSRRIMTRIDAA
OPtRNAsecMUS.gi ACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG
cons :*****:**. :* * :: **:*******:** : * *: .
Cf_Contig1068_s QRLGRVDYVVQSSDKNFLVPVGGAVVTSSSAERCNAAAALYAGRA
OPtRNAsecMUS.gi ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRA
cons *:**:* .*** ****:******:::. . : : :*.***
Cf_Contig1068_s SASPIIDLFITALSLGRRGMQELWAERYRCRRRLVDQLCGFAKAR
OPtRNAsecMUS.gi SASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAH
cons **** :*::** **** * ::* ** . * ** :*:*:
Cf_Contig1068_s GEVV-----------------------------------------
OPtRNAsecMUS.gi NERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGAR
cons .* :
Cf_Contig1068_s ---------------------------------------------
OPtRNAsecMUS.gi AVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDL
cons
Cf_Contig1068_s ---------------------------------------------
OPtRNAsecMUS.gi FIKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEMALKLDDV
cons
Cf_Contig1068_s ---------L
OPtRNAsecMUS.gi LGDVGQGPAL
cons *