T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:7 sec.
SCORE=94
*
BAD AVG GOOD
*
Cf_Contig1068_s : 95
gi|93569092|gb| : 95
gi|328872098|gb : 94
scaffold_2_subs : 93
gi|340503345|gb : 90
contig_09_subse : 96
Lt_contig6577_s : 95
PHYCAscaffold_5 : 96
Contig19987_sub : 95
supercont1.837_ : 95
T.congo.pschr.1 : 94
OPtRNAsecMUS.gi : 95
cons : 94
Cf_Contig1068_s MDERGLQLAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVG
gi|93569092|gb| ------------------------------------KKKKLPNIG
gi|328872098|gb ---------------------------------------RLPDKG
scaffold_2_subs ---------------------------------------------
gi|340503345|gb ------------ISPQYIKS-QNSFQTFSNTIKILLSRQLFPH-P
contig_09_subse MDDRSLKLAEDFVSARYIEAGRESLRATARIMRSILAQRCCPDEG
Lt_contig6577_s MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEA
PHYCAscaffold_5 MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEG
Contig19987_sub ---------------------------------------------
supercont1.837_ MNKPNYKLAEGLVPANYVRQAVESRNTRENLVKTVLSQRRLPVGG
T.congo.pschr.1 MDERALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEG
OPtRNAsecMUS.gi MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
cons
Cf_Contig1068_s LSDAVIQLLLRQLAAMDTNNFAAHVGGGEREGRVASALVRQRHFD
gi|93569092|gb| YNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYG
gi|328872098|gb WDDQFIRWFLNDIAKMDSNNYVENAGVGEREGRIHSRIVQERHFG
scaffold_2_subs ------------------------CGVGEREGRVFSSLVSQRHYG
gi|340503345|gb LPDLEIELLISQLSLMDTNNFSQKIGVGEREGRIIS-IVQKRHFY
contig_09_subse LTDAAIELILRQLSLMDTNNLAHHVGGGEREGRVVSALVRMRHFH
Lt_contig6577_s LTDAAIELILRQLSLMDTNNFAHHVGGGEREGRVVSALVRMRHFH
PHYCAscaffold_5 WDDASVEMLLQTLSAMDSNNFQGSAGAGEREARVFSPMVARRHFR
Contig19987_sub ---------------------------------------------
supercont1.837_ WDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLVRDMHNG
T.congo.pschr.1 LNDCAIELLLHQIAMMDTNNFTAHVGAGEREGRVASTLVQRRYYN
OPtRNAsecMUS.gi WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
cons
Cf_Contig1068_s FTHGIGRSGDLASEQPKAAGSSLLYKLTNIMVLDLIRLAGAP---
gi|93569092|gb| FAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLE-Q-
gi|328872098|gb LAHGIGRSGDISEQQPKAAGSSLVQRLCSYLVMDSMSVAGLN---
scaffold_2_subs LSHGMGRSGDITEPQPKAAGSSALVKLALLLTLDALRRGSKLDAK
gi|340503345|gb MSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKDMLKLVGLC---
contig_09_subse LTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLIRQAGAP---
Lt_contig6577_s LTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLLRQAGAP---
PHYCAscaffold_5 LAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMR---
Contig19987_sub ---------------------------------------------
supercont1.837_ MGHGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGAT---
T.congo.pschr.1 LTHGVGRSGDICSDQPKAAGSSLLYKLTNHMVLDLLRQAGTP---
OPtRNAsecMUS.gi FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH---
cons
Cf_Contig1068_s -STAAAVVVPMATGMTLALVLRCVAKTR----VKERYVVWPRIDQ
gi|93569092|gb| SSLSNCLLLPMATGMTLALTMLTLKSIN---ANNKRYVLWPRIDQ
gi|328872098|gb -SIGECLVLPMATGMTIALTLMTFTKHC--RPPTAKYVIWPRIDQ
scaffold_2_subs GPAAYGILLPLCTGMSISLLLASIRSKEENSETKKDIVLWSRIDQ
gi|340503345|gb KKSRNLLILPAATGMACFLTLMALKKNI----SEKKYVIWSRIDQ
contig_09_subse -STAAAVVVPMATGMTLALVLRCVAKTH----ATPRYVIWPRIDQ
Lt_contig6577_s -STAAAVVVPMSTGMTLALVLRCVAKSR----TEERYVIWPRIDQ
PHYCAscaffold_5 -AVQAALVLPVATGMSLTLVLLQLNELK----PGAHYVIWPRIDQ
Contig19987_sub ---------------------------------------------
supercont1.837_ -RTKSCYVFPLATGMAVVMCLLALKAKN----PTATHVVWPRIDQ
T.congo.pschr.1 -SLASAAVIPMATGMTISLVLRSIAHHR----DPPRFVIWTRVDQ
OPtRNAsecMUS.gi -SVASCFVVPMATGMSLTLCFLTLRHKR----PKAKYIIWPRIDQ
cons
Cf_Contig1068_s KTALKCIDSAGLLPLPVEL----------HCDVEDIAATINAVGG
gi|93569092|gb| KSCLKSIITAGLIPIVIPNQL---DGDMIRTDLVAIEDKIKEL-G
gi|328872098|gb KSCLKAIATAGLVPVVIENVL---QGDVITTDLEAIENKIIEL-G
scaffold_2_subs KSCFKAIHSAGLICVVVPTKI---EGDEVITDIDAMEAALSKHE-
gi|340503345|gb KTCLKCILAANLEPYVLELVI----GDKLCSDVEKLGKLLENN-D
contig_09_subse KTALKCIDAAGLVPVPTPTSS---SSLFLECHVDDVAAAVNAVGG
Lt_contig6577_s KTALKCIDAAGLIPVPVQLRP---AVTLARSADPWVSANRDSL-G
PHYCAscaffold_5 KSCFKSILAAGLTPLVLPNVLVEEEGGYLKTDLAGMAELIDQY-G
Contig19987_sub ---------------------------------------------
supercont1.837_ KTCLKAIVATGFIPVVIENIT---EDNELRTDLPAIEDAIKRAGG
T.congo.pschr.1 KTALKCIELSGFIPVVVPLRR---ASVFLQAHVDDVAASIERVGG
OPtRNAsecMUS.gi KSCFKSMVTAGFEPVVIENVL---EGDELRTDLKAVEAKIQEL-G
cons
Cf_Contig1068_s PAHVVCVLSTTSCFAPRLPDNTVAIARYCKEHAIPYVVNNAYGVQ
gi|93569092|gb| VDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQ
gi|328872098|gb PENVVCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQ
scaffold_2_subs -GRVLAVITTSSCFTPRVPDAVDKVAKLCKVSNVYHIINNAYGLQ
gi|340503345|gb FKKVLCVFSTTSCFAPRIPDNITEIGRICFVNNIPHIVNNAYGLC
contig_09_subse PSQVVCVLSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVNNAYGVQ
Lt_contig6577_s RDKVVCVLSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQ
PHYCAscaffold_5 ADSILAVMSTTSCFAPRAYDSVQEIAKMCQDRNIAHVINNAYGVQ
Contig19987_sub -------------------------------------VNNAYGLQ
supercont1.837_ PEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNAYGVT
T.congo.pschr.1 PTNVLCVLSTTSCFAPH-------------------------RVQ
OPtRNAsecMUS.gi PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ
cons :
Cf_Contig1068_s SRRIMTRID-AAQ---RLGRVDYVVQSSDKNFLVPVGGAVVTSSS
gi|93569092|gb| CSKILHNIS-QAC---KLGRVDAFIQSTDKNFMVPVGGAIISGPN
gi|328872098|gb CSKIVHAIN-ESCQSDKQRRVDAIIQSTDKNYMVPVGGAIITSPK
scaffold_2_subs CAKTSKLIN-RAC---VVGRVDAVVCSTDKNFLVPVGGAIIISPS
gi|340503345|gb A-KIVNLINETYS---KNHRIDAIISSTDKNFLVPVGGAIIYGEN
contig_09_subse SRRIMTRLD-AAQ---RLGRVDFVVQSGDKNFLVPVGGSIICSGD
Lt_contig6577_s SRRIMTRLD-AAQ---RLGRVDFVVQSGDKNFLVPVGGSIISSSD
PHYCAscaffold_5 ASKCVHEVE-LAM---RVGRVDAVVQSLDKNFMVPVGGAIVCSAS
Contig19987_sub DHAVCQGIT-QAA---KKGRIDAIIQSTDKNFMVPVGGAIIAGPD
supercont1.837_ SSLIMHHVN-EAM---RLGRVDAYVQSTDKNFLVPVGGSVIAGPD
T.congo.pschr.1 SRSIMQRID-AAI---RLGRVDAIVQSGDKNFLVPVGGAVLSGGR
OPtRNAsecMUS.gi SSKCMHLIQ-QGA---RVGRIDAFVQSLDKNFMVPVGGAIIAGFN
cons : *:* : * ***::*****::: .
Cf_Contig1068_s AER-CNAAAALYAGRASASPIIDLFITALSLGRRGMQELWAERYR
gi|93569092|gb| SEF-IDQISRNYPGRANSSPILDVFITLLSMGKQGWLNLLKERKE
gi|328872098|gb KEK-QQHKQKNYPGRANGSPILDLFITLLSMGRQGYKELLDERKQ
scaffold_2_subs KNI-IGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTS
gi|340503345|gb K-L-IKEINENYPGRASLSPIIDLFITFLSTGREKWE-LLNIRKE
contig_09_subse KER-CKAVAALYAGRASMSPIVDLFITALSLGRRGMQTLWSDRYK
Lt_contig6577_s KAR-CQAVAALYAGRASMSPIVDLFITALSLGRRGMQALWSDRYR
PHYCAscaffold_5 RDL-VDRVAKFYPGRASATPTLDFFITMLQMGKSGYRQLLDERKH
Contig19987_sub EKF-MNAIAKNYPGRASGSPVLDLFITLISLGRDGYEKLLHERKE
supercont1.837_ KHLKVADVCKTYPGRASGTPTLDVFITLLSMGSNGYKHRLLQRKE
T.congo.pschr.1 TE--VARATSLYAGRASASPVVDLFITALSLGRSGFQRLWDARYF
OPtRNAsecMUS.gi EPF-IQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKE
cons *.***. :* :*.:** :. * *
Cf_Contig1068_s CRRRLVDQLCGFAKARG-EVV------------------------
gi|93569092|gb| LLIYFNEQLSKFALENN-EKLLNTINENKISFALTLSSNNFNN--
gi|328872098|gb LLTYFRDQLASLSLQFPNCRLLDTP-DNRISLGLALAVASGDQQK
scaffold_2_subs VLETFPERLREVAEKHG-ERILVCP-NNTVSFGLTLDGLARP-KE
gi|340503345|gb NLIYLKEKLNVLL-KYE-ERVLST--ENSISVGFTLKNIK-N-KN
contig_09_subse CRARLIRQLRVFARERR-EVL------------------------
Lt_contig6577_s CRARLIRQLREFARERR-EVL------------------------
PHYCAscaffold_5 LAVYMREKLESLAAEEG-ERVLRVS-SNEVLVGC-----------
Contig19987_sub MYNYLKEKMSAIAKKYG-ERLLLTP-HNPV---------------
supercont1.837_ IYEILKQKMSEVAAKHG-ERLLHTP-HNPISLAITITPRRRA-SS
T.congo.pschr.1 LRELLEQRLRDFARARE-ETL------------------------
OPtRNAsecMUS.gi MFVYLSTQLKKLAEAHN-ERLLQTP-HNPISLAMTLKTIDGH-HD
cons : :: . :
Cf_Contig1068_s ---------------------------------------------
gi|93569092|gb| ---------------------------------------------
gi|328872098|gb LSISMIGSKLFSRSCSGARVIELPGSKKSVAGLDFESYGSHINNY
scaffold_2_subs VEITSFGAMLFSRCVSGTRVVPR-SQLKSIGGQDFIGFGSSTNEY
gi|340503345|gb ISILELGGILYNKRIMGGRIIIN-NEKVLKIDNLFKNYGCSNDFY
contig_09_subse ---------------------------------------------
Lt_contig6577_s ---------------------------------------------
PHYCAscaffold_5 ---------------------------------------------
Contig19987_sub ---------------------------------------------
supercont1.837_ QNVTRLGAMLFRRGVSGARVVSA-DDVKVVAGVSFKGYGAHADAY
T.congo.pschr.1 ---------------------------------------------
OPtRNAsecMUS.gi KAVTQLGSMLFTRQVSGARAVPL-GNVQTVSGHTFRGFMSHADNY
cons
Cf_Contig1068_s ---------------------------------------------
gi|93569092|gb| --------------------------NE-----------------
gi|328872098|gb H-SSYLTVACAIGITKDDIDTFMKRLKK-----------------
scaffold_2_subs P-HAYMTAACAIGVSIFEIEEFYVRLDKTLTE-------------
gi|340503345|gb TELPYMTVACAIGMEKKEIDMFLIKLEG-----------------
contig_09_subse ---------------------------------------------
Lt_contig6577_s ---------------------------------------------
PHYCAscaffold_5 ---------------------------------------------
Contig19987_sub ---------------------------------------------
supercont1.837_ F-TPYLTVAAALGMTRKDVEQVVERIDK-----------------
T.congo.pschr.1 ---------------------------------------------
OPtRNAsecMUS.gi P-CAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASVVSG
cons
Cf_Contig1068_s ------------------------------L
gi|93569092|gb| -----------------------------EI
gi|328872098|gb -----------------------------IL
scaffold_2_subs ------------------------FKRKKKK
gi|340503345|gb -----------------------------IN
contig_09_subse ------------------------------L
Lt_contig6577_s ------------------------------L
PHYCAscaffold_5 -----------------------------VL
Contig19987_sub ------------------------------S
supercont1.837_ -----------------------------TL
T.congo.pschr.1 ------------------------------L
OPtRNAsecMUS.gi ADRNKAEDADIEEMALKLDDVLGDVGQGPAL
cons