T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=93
*
 BAD AVG GOOD
*
scaffold_3_subs   :  93
gi|288565202|gb   :  93
cons              :  93

scaffold_3_subs   --DYDIIIIGAGASGMFASGTTSMLGSKTLLLDLSNNNTNSNSNN
gi|288565202|gb   TYDWDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKP---SPQGS

cons                *:*:::**.*:.*: **  ::  *.*.*:**  :    * ...


scaffold_3_subs   TNNVGGDCTNYACVPSKAVRSEARM--------------------
gi|288565202|gb   TWGLGGTCVNVGCIPKKLMHQSAIMGELLHKDAEAFGWAVPNATF

cons              * .:** *.* .*:*.* ::..* *                    


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   DWTKLVTSVQDYIHGLNFKYRVDLRDKKVKYENFLGTFKDAHTLT

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   LTNPAKGKPPKDVTFRRALIAVGGRPKSLDCPGADLAISSDDIFS

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   RPTPPGKTLVVGASYVALECAGFLKAQGFDVTVMVRSILLRGFDT

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   DMAARIGTYMEEEAKIDFIKGAVPTSIEQLANGEGIYDTVLNATG

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   RNPDVSGLNLPAAGVGLNPKTGRIAVTHEQTSAPHIYAVGDVIDG

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   PELTPVAIQAGRLLAKRLFDNSATLMAYDKVCTAVFTPIEYGCCG

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   LSEDAAIETIGADNLGVYHQSFTPLEWSLSHDRALAKECYCKLIV

cons                                                           


scaffold_3_subs   ---------------------------------------------
gi|288565202|gb   DRTQNDRVVGFHYLGPNAGEVTQAVGIAMKLNASYDDFVSTVGIH

cons                                                           


scaffold_3_subs   ---------------------------
gi|288565202|gb   PTTAEIFTTLEITKESGLDASAAGCXG

cons