T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=95
*
 BAD AVG GOOD
*
scaffold_61_sub   :  95
scaffold_61_sub   :  95
cons              :  95

scaffold_61_sub   LVVIGGGSGGMAAAKEAALLGAKVALCDFVKPSPEGTTWGLGGTC
scaffold_61_sub   LVVIGGGSGGMAAAKEAALLGAKVALCDFVKPSPEGTTWGLGGTC

cons              *********************************************


scaffold_61_sub   VNVGCIPKKLFHIGATLRESIQADANFFGISSVGVKPDEMGQPPT
scaffold_61_sub   VNVGCIPKKLFHIGATLRESIQADANFFGISSVG-----------

cons              **********************************           


scaffold_61_sub   LKTDQNWMAVKDNIQNYIRSLNFKYRVGLREKSVQYLNKLASFKD
scaffold_61_sub   --TDQNWMAVKDNIQNYIRSLNFKYRVGLREKSVQYLNKLASFKD

cons                *******************************************


scaffold_61_sub   DHTVELVDKKGQTSEITASRFLVATGGRPTPLDCEGGDLAISSDD
scaffold_61_sub   DHTVELVDKKGQTSEITASRFLVATGGRPTPLDCEGGDLAISSDD

cons              *********************************************


scaffold_61_sub   VFFLDKDPGKTLCVGASYISLECAGFLAGMSKDVTVAVRSILLRG
scaffold_61_sub   VFFLDKDPGKTLCVGASYISLECAGFLAGMSKDVTVAVRSILLRG

cons              *********************************************


scaffold_61_sub   FDRECSERIGDYMKEHGVKFKTKVTPSKLERVENDRIKVTFSDGT
scaffold_61_sub   FDRECSERIGDYMKEHGVKFKTKVTPSKLERVER----------T

cons              *********************************.          *


scaffold_61_sub   DDVYDTVLGAVGRTADTIKLRLESVNVDTNPKNRKIKTINEQSSC
scaffold_61_sub   DDVYDTVLGAVGRTADTIKLRLESVNVDTNPKNRKIKTINEQSSC

cons              *********************************************


scaffold_61_sub   PNIYAIGDVMDGCPELTPVAIQAGKALARRLYGGSKEPMDYINIC
scaffold_61_sub   PNIYAIGDVMDGCPELTPVAIQAGKALARRLYGGSKEPMDYINIC

cons              *********************************************


scaffold_61_sub   TTVFTPIEYACIGLSEEDAIAKHGKDGIEVYHREFLPLEWSLSRH
scaffold_61_sub   TTVFTPIEYACIGLSEEDAIAKHGKDGIEVYHREFLPLEWSLSRH

cons              *********************************************


scaffold_61_sub   DSNAFAKILVDKKSSDEQVVGIQXVGPNAGEIMQGYGVSMKNGLT
scaffold_61_sub   DSNAFAKILVDKKSSDEQVVGIQ-I-----ELVP-MLERLCRGMV

cons              *********************** :     *:     : .*:.


scaffold_61_sub   YR---------------------------QLTDTVGIHPTSSEEL
scaffold_61_sub   YQXRMVXHTDSLLIQLVFIQHHQKNLXHYLLLRVVAMTP------

cons              *:                            *  .*.: *      


scaffold_61_sub   VTLSITKSSGDDAAAGGC
scaffold_61_sub   ------------LLVDAE

cons                            ...