TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium transferase [Dictyostelium discoideum AX4] (479 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 821 0.0 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 30 5.6 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 29 7.3 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 821 bits (2121), Expect = 0.0 Identities = 434/517 (83%), Positives = 434/517 (83%), Gaps = 38/517 (7%) Frame = +3 Query: 1 MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIH---------------------- 38 MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIH Sbjct: 3095673 MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHVGFLNSFFKKI*NKKKKKKVNL 3095852 Query: 39 ----------------KKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSG 82 KKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSG Sbjct: 3095853 IFFYIHTY*HPKKKKKKKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSG 3096032 Query: 83 LVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCXXX 142 LVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNC Sbjct: 3096033 LVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCLLL 3096212 Query: 143 XXXXXXXXXXXXXXXKSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIR 202 KSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIR Sbjct: 3096213 PMATGMTLALTMLTLKSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIR 3096392 Query: 203 TDLVAIEDKIKELGVDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQC 262 TDLVAIEDKIKELGVDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQC Sbjct: 3096393 TDLVAIEDKIKELGVDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQC 3096572 Query: 263 SKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPI 322 SKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPI Sbjct: 3096573 SKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPI 3096752 Query: 323 LDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFAXXXX 382 LDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFA Sbjct: 3096753 LDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFALTLS 3096932 Query: 383 XXXXXXXXXXXXXXXXXXXXXXXMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGS 442 MIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGS Sbjct: 3096933 SNNFNNNEEIISNNNNNNNNTFSMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGS 3097112 Query: 443 HIDNYSTSYLTVACAIGITKLEIDTFIQRLSKLFNKK 479 HIDNYSTSYLTVACAIGITKLEIDTFIQRLSKLFNKK Sbjct: 3097113 HIDNYSTSYLTVACAIGITKLEIDTFIQRLSKLFNKK 3097223 Score = 31.2 bits (69), Expect = 1.9 Identities = 32/167 (19%), Positives = 74/167 (44%) Frame = -3 Query: 206 VAIEDKIKELGVDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKI 265 ++I + + + VD + S + + K+ + ++I + YN+ ++ ++ I Sbjct: 4455546 ISISNNLNKSVVDKLN---SKLDLYRDEIHLKVEQYNQITENYNLKILLEEKIWIKSLSI 4455376 Query: 266 LHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDV 325 L++ + K+ +++ ++ST NF+ + + NS + ++ + S L Sbjct: 4455375 LNHFLKNTKILKLNNQVKSTIDNFIELIMDNCLCSENS-----LVKSMAIKVLS---LQS 4455220 Query: 326 FITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINE 372 I + ++ K L E LI+FN+Q +NE+ I+E Sbjct: 4455219 MINISTLSKNTCSLLESLDTESLIFFNQQKDNHHQNSNEESSTEIDE 4455079 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 29.6 bits (65), Expect = 5.6 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -3 Query: 20 QAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELIL----NEISLMDSNNFIENIGVGER 75 + I Q NK L+ L I++ + N N+K E+ + NEI +S + IE + Sbjct: 4313985 EEISNILQSNKTLKKLKIYQNIINNNNNNKNTEIEIEIDENEIFFRNSLDEIEMMDTSTT 4313806 Query: 76 EGRIY 80 E RIY Sbjct: 4313805 ESRIY 4313791 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = +3 Query: 18 IDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEIS--LMDSNNFIENIGVGER 75 ID ++ + NK LE+ I K YND ++++ N S ++NN +N G Sbjct: 910878 IDTEVKRQKKINKRLESSKIIKSSIITDYNDNELKILNNNTSSGSTNNNNHHQNSNNGYN 911057 Query: 76 EGRIYSGLVEKRHY 89 +YS H+ Sbjct: 911058 NSFVYSAWRAYNHH 911099 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +3 Query: 346 ELLIYFNEQLSKFALENNEKLL-NTINENKISF 377 E L+YF +L+ + L NNEKL N IN+N F Sbjct: 4570620 ETLLYFKNELN-YKLPNNEKLFENLINDNNCFF 4570715 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.319 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,700,203 Number of Sequences: 6 Number of extensions: 244676 Number of successful extensions: 1281 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 1166 Number of HSP's gapped (non-prelim): 448 length of query: 479 length of database: 11,314,357 effective HSP length: 105 effective length of query: 374 effective length of database: 11,313,727 effective search space: 4231333898 effective search space used: 4231333898 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)