genewise output
Score 97.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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gi|299471650|em  103 TLDTLPFDNRVIRELPVDPITDNYVRR-VENACFSIVAPDPVVKP     
                     +L+ LPFDN  +  LP+DPI +NYVRR V+ ACFS+V P P+  P     
                     SLENLPFDNTALHTLPIDPIKENYVRRSVKGACFSLVEPTPIENP     
Contig6376:subs  519 tcgacctgaagtcaccagcaagatgaaagaggttatggcacagac     
                     ctaatctaacctactctactaaaatgggtagcgtgttaccctaac     
                     ctatcttcctcgtctttctaggttgagttgtttccgaaattcatc     


gi|299471650|em  147                           MVAASNSALGLLGLAAEEGQRED 
                                               +V    SAL L+ L   E +R D 
                                V:R[agg]       LVCYCPSALALIDLDPNETKRPD 
Contig6376:subs  654 AGGTAGATC  Intron 1   CAGGtgtttctgcgcagcgcagaaacg 
                       <2-----[656  : 1135]-2> ttgagccctcttatacaacagca 
                                               gcttccgctccatctatacggat 


gi|299471650|em  171 AAEYFSGNKLMPGAQPHAHAYCG                           
                      AEY+ GNK +PG++  AH YCG                           
                     FAEYLCGNKKIPGSETAAHCYCG                           
Contig6376:subs 1206 tggtctgaaaacgtgaggctttg                           
                     tcaatggaaatcgcacccagagg                           
                     tggcgcacggtgtggtcaccttt                           


//
Making a R in phase 2 intron
>Contig6376:subseq(0,20000).pep
SLENLPFDNTALHTLPIDPIKENYVRRSVKGACFSLVEPTPIENPRLVCYCPSALALIDL
DPNETKRPDFAEYLCGNKKIPGSETAAHCYCG
//
>Contig6376:subseq(0,20000).[519:1274].sp
TCCCTTGAAAATCTCCCTTTTGACAACACTGCCTTGCATACCCTTCCTATTGACCCTATA
AAGGAGAATTATGTGAGAAGGAGTGTTAAGGGTGCTTGTTTCAGCTTGGTAGAACCAACT
CCTATCGAAAATCCCAGGTTGGTCTGTTATTGCCCCTCGGCCCTTGCCCTCATAGATCTC
GATCCAAATGAAACCAAGAGGCCAGATTTTGCGGAGTACCTGTGCGGAAACAAGAAGATT
CCGGGTTCGGAGACTGCCGCACACTGCTATTGTGGT
//
Contig6376:subseq(0,20000)	GeneWise	match	519	1274	97.60	+	.	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	cds	519	655	0.00	+	0	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	intron	656	1135	0.00	+	.	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	cds	1136	1274	0.00	+	1	Contig6376:subseq(0,20000)-genewise-prediction-1
//