genewise output Score 356.38 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|299471650|em 168 REDAAEYFSGNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEG R++ A+YFSGN +PG P AH Y G QFG+FAGQLGDG A LGE+ RDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITN supercont1.1171 9520 cgaagcttagagaccgagcggcttggactgatggctgggcgaatggaaa gaatcaatggatctcgttcccagacgcatgatcgatgaggccatgatca actacgcctctgtgacggtcacccctagccctcagaatgagctatgcgc gi|299471650|em 217 PSG-RWEIQFKGAGLTPYSRSA G G +WE+Q+KGAGLTPYSR+A G KRGQKWELQLKGAGLTPYSRTA D:D[gac] G supercont1.1171 9667 acgcatgcctagggtacttaagGGTGCGTT Intron 1 CAGACg aggaagatatagcgtccacgcc <1-----[9734 :10160]-1> g agcgagggggattggcgtcgaa c gi|299471650|em 240 RKVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ R V RSSIRE++CSE MH LGI TTRAA+LVTSDT V RD +Y G+ I+ RAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTIE supercont1.117110166 cggtcttacgtatagcacgcgagaacggtcgatgacggcgcatggcaag gcttgcctgaatggaatactgtcccgcccttccactttgactaagacta gttcggctcgccccatgcagttacacaccaccactggaaccgtcaccaa gi|299471650|em 289 ERASIVTRLAPTFLRFGSFEIFKPRDPRTGRD E++++V RLAP+FLRFGS+E+F D RTGR EQSTVVLRLAPSFLRFGSWEVFLGEDERTGRA supercont1.117110313 gctaggtccgcttcctgttggtcggggaagcg aacctttgtcccttgtgcgatttgaaagcggc agcaagagacagccctcggggtgcgcagtatg gi|299471650|em 321 PSAGND--ALRLQMLEYAIGRFF PSAG + L QML++ + + G:G[ggg] PSAGAEHFPLAKQMLDHVVSTHY supercont1.117110409 GGTATGTC Intron 2 CAGGGctggggctccgacacgcggtact <1-----[10410:10795]-1> cccgcaatctcaattaattccaa ggttggcttgcgggaccagctcc gi|299471650|em 343 PGAAAAGPEGSKARYLAMYEEAVRSTAELVAKWQ P AA + RY+A+++E V TAE AKWQ PDIWAA-HDNDTDRYIAFFQELVDRTAETCAKWQ supercont1.117110867 cgatgg cgagagatagttcgtggcaggatgatc catgcc aaaacagatcttaattagccacgcaga tccgtc tcccacactcccgagctcgagcttggg gi|299471650|em 377 CVGFTHGVLNTDNMSILGLTIDYGPY VGF HGVLNTDNMSILGLTIDYGPY GVGFVHGVLNTDNMSILGLTIDYGPY supercont1.117110966 GTGTGGC Intron 3 TAGgggtgcggcaagaaaacgcaagtgct <0-----[10966:11481]-0>gtgttagttacaatgttgtctaagca tagtgctgccatcgtcgggctctagt gi|299471650|em 403 GFMDFFDPKFVPNGSDGGGRYSYERQPEMCK GFM +FD +VPN SD GRY Y+ QP +CK GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK supercont1.117111560 gtagttgtgagcactgaagctctcaccgata gttgatacattcaacaccggagaaaacgtga ccgacttgtgcctcaccaagtacgcggtcta gi|299471650|em 434 NLHKFAEAV--APALPLSDSTAA NL ++A+A+ + +S+ + W:W[tgg] NLTRLAQALDTSGVICMSNLSPV supercont1.117111653 TGGTAAGGG Intron 4 CAGGataccgcgtgatggatatactcg <2-----[11655:11888]-2> atcgtcactaccgttgtcatcct cggaggggaccatctcgtcgaag gi|299471650|em 456 LEKYDGLFKGYYEEGMRRK LGLF-SV +E YD +++ +Y M K LGL+ SV IENYDAVLRRHYSATMLAK LGLIRSV supercont1.117111959 agatgggtccctagaacgaGTAAGTC Intron 5 CAGcgcactg taaaacttggaagccttca<0-----[12016:12395]-0>tgttgct agccccgacatctacgaag gtatgta gi|299471650|em 481 EEDDDGLFESLFATMADTSADFTGTFRELAQL EE D L LFATM DT D+T FRELA + EESDRELVSELFATMNDTGCDMTALFRELADV supercont1.117112417 ggtgcgcgtgctgaaagagtgaagctcgtggg aacagattcattcctaacggatccttgatcat gacctgggtggtccgtcggtcgtggctgagcg // Making a D in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron >supercont1.1171:subseq(0,20000).pep RDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKRGQKWELQLK GAGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHT IEEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLDHVVSTHYPD IWAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLTIDYGPYGFM GYFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSPVIENYDAVL RRHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADV // >supercont1.1171:subseq(0,20000).[9520:12512].sp CGAGACAATATAGCCCAGTACTTCAGTGGCAATGTGACTCTGCCAGGCATGGTGCCTGCC GCACACTGCTACGCCGGTACACAGTTCGGCAACTTTGCCGGACAGTTAGGAGATGGGCGA GCGACCAATTTAGGTGAGATCACGAACAAACGGGGCCAGAAATGGGAGCTGCAGTTGAAA GGTGCTGGGTTGACCCCGTATTCCAGGACAGCAGACGGCCGGGCTGTTTTCCGGTCGTCC ATTCGCGAGTACATCTGCAGCGAACATATGCACGCACTGGGTATTGCAACCACACGCGCA GCCTCCCTAGTCACCTCAGACACTCTGGTGGTACGAGACCCCATGTATGACGGACACACC ATAGAAGAACAGTCCACAGTAGTGTTACGGCTAGCCCCATCGTTCCTCCGCTTTGGCTCG TGGGAGGTGTTTCTGGGCGAGGACGAAAGGACTGGACGTGCGGGGCCGTCGGCTGGTGCG GAGCACTTTCCTCTGGCCAAGCAGATGCTAGACCACGTAGTGTCCACTCACTACCCTGAC ATCTGGGCTGCCCATGACAACGACACAGACAGATACATTGCCTTCTTCCAGGAATTGGTC GATCGCACGGCAGAGACCTGTGCTAAGTGGCAGGGTGTAGGGTTTGTGCACGGTGTGCTC AACACAGATAACATGAGTATCCTGGGGCTGACCATTGACTATGGACCGTATGGCTTCATG GGATACTTTGATTCGGATATGGTCCCCAATCACTCAGACACCACAGGACGGTATCGATAC CAGAACCAGCCGGGTATCTGTAAATGGAACTTGACGCGACTGGCGCAGGCGTTAGACACC TCAGGTGTCATTTGCATGTCTAACCTGTCACCAGTGATAGAGAACTACGACGCCGTGTTA CGCCGACATTACAGTGCAACCATGCTAGCAAAGCTGGGTCTAATTCGGTCTGTAGAGGAA TCCGACCGTGAGCTGGTGTCTGAGCTGTTTGCCACCATGAATGACACGGGGTGTGACATG ACTGCGCTGTTCCGTGAGTTAGCGGACGTG // supercont1.1171:subseq(0,20000) GeneWise match 9520 12512 358.37 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 9520 9733 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 9734 10160 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 10161 10409 0.00 + 2 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 10410 10795 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 10796 10965 0.00 + 2 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 10966 11481 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 11482 11654 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 11655 11888 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 11889 12015 0.00 + 1 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 12016 12395 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 12396 12512 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 //