genewise output
Score 356.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|299471650|em  168 REDAAEYFSGNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEG 
                     R++ A+YFSGN  +PG  P AH Y G QFG+FAGQLGDG A  LGE+   
                     RDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITN 
supercont1.1171 9375 cgaagcttagagaccgagcggcttggactgatggctgggcgaatggaaa 
                     gaatcaatggatctcgttcccagacgcatgatcgatgaggccatgatca 
                     actacgcctctgtgacggtcacccctagccctcagaatgagctatgcgc 


gi|299471650|em  217 PSG-RWEIQFKGAGLTPYSRSA                          G 
                       G +WE+Q+KGAGLTPYSR+A                          G 
                     KRGQKWELQLKGAGLTPYSRTA          D:D[gac]        G 
supercont1.1171 9522 acgcatgcctagggtacttaagGGTGCGTT  Intron 1   CAGACg 
                     aggaagatatagcgtccacgcc <1-----[9589 :10015]-1>  g 
                     agcgagggggattggcgtcgaa                          c 


gi|299471650|em  240 RKVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ 
                     R V RSSIRE++CSE MH LGI TTRAA+LVTSDT V RD +Y G+ I+ 
                     RAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTIE 
supercont1.117110021 cggtcttacgtatagcacgcgagaacggtcgatgacggcgcatggcaag 
                     gcttgcctgaatggaatactgtcccgcccttccactttgactaagacta 
                     gttcggctcgccccatgcagttacacaccaccactggaaccgtcaccaa 


gi|299471650|em  289 ERASIVTRLAPTFLRFGSFEIFKPRDPRTGRD                  
                     E++++V RLAP+FLRFGS+E+F   D RTGR                   
                     EQSTVVLRLAPSFLRFGSWEVFLGEDERTGRA                  
supercont1.117110168 gctaggtccgcttcctgttggtcggggaagcg                  
                     aacctttgtcccttgtgcgatttgaaagcggc                  
                     agcaagagacagccctcggggtgcgcagtatg                  


gi|299471650|em  321                           PSAGND--ALRLQMLEYAIGRFF 
                                               PSAG +   L  QML++ +   + 
                               G:G[ggg]        PSAGAEHFPLAKQMLDHVVSTHY 
supercont1.117110264 GGTATGTC  Intron 2   CAGGGctggggctccgacacgcggtact 
                      <1-----[10265:10650]-1>  cccgcaatctcaattaattccaa 
                                               ggttggcttgcgggaccagctcc 


gi|299471650|em  343 PGAAAAGPEGSKARYLAMYEEAVRSTAELVAKWQ                
                     P   AA  +    RY+A+++E V  TAE  AKWQ                
                     PDIWAA-HDNDTDRYIAFFQELVDRTAETCAKWQ                
supercont1.117110722 cgatgg cgagagatagttcgtggcaggatgatc                
                     catgcc aaaacagatcttaattagccacgcaga                
                     tccgtc tcccacactcccgagctcgagcttggg                


gi|299471650|em  377                        CVGFTHGVLNTDNMSILGLTIDYGPY 
                                             VGF HGVLNTDNMSILGLTIDYGPY 
                                            GVGFVHGVLNTDNMSILGLTIDYGPY 
supercont1.117110821 GTGTGGC  Intron 3   TAGgggtgcggcaagaaaacgcaagtgct 
                     <0-----[10821:11336]-0>gtgttagttacaatgttgtctaagca 
                                            tagtgctgccatcgtcgggctctagt 


gi|299471650|em  403 GFMDFFDPKFVPNGSDGGGRYSYERQPEMCK                   
                     GFM +FD  +VPN SD  GRY Y+ QP +CK                   
                     GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK                   
supercont1.117111415 gtagttgtgagcactgaagctctcaccgata                   
                     gttgatacattcaacaccggagaaaacgtga                   
                     ccgacttgtgcctcaccaagtacgcggtcta                   


gi|299471650|em  434                           NLHKFAEAV--APALPLSDSTAA 
                                               NL ++A+A+     + +S+ +   
                                W:W[tgg]       NLTRLAQALDTSGVICMSNLSPV 
supercont1.117111508 TGGTAAGGG  Intron 4   CAGGataccgcgtgatggatatactcg 
                       <2-----[11510:11743]-2> atcgtcactaccgttgtcatcct 
                                               cggaggggaccatctcgtcgaag 


gi|299471650|em  456 LEKYDGLFKGYYEEGMRRK                       LGLF-SV 
                     +E YD +++ +Y   M  K                       LGL+ SV 
                     IENYDAVLRRHYSATMLAK                       LGLIRSV 
supercont1.117111814 agatgggtccctagaacgaGTAAGTC  Intron 5   CAGcgcactg 
                     taaaacttggaagccttca<0-----[11871:12250]-0>tgttgct 
                     agccccgacatctacgaag                       gtatgta 


gi|299471650|em  481 EEDDDGLFESLFATMADTSADFTGTFRELAQL                  
                     EE D  L   LFATM DT  D+T  FRELA +                  
                     EESDRELVSELFATMNDTGCDMTALFRELADV                  
supercont1.117112272 ggtgcgcgtgctgaaagagtgaagctcgtggg                  
                     aacagattcattcctaacggatccttgatcat                  
                     gacctgggtggtccgtcggtcgtggctgagcg                  


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
>supercont1.1171:subseq(145,20000).pep
RDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKRGQKWELQLK
GAGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHT
IEEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLDHVVSTHYPD
IWAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLTIDYGPYGFM
GYFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSPVIENYDAVL
RRHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADV
//
>supercont1.1171:subseq(145,20000).[9375:12367].sp
CGAGACAATATAGCCCAGTACTTCAGTGGCAATGTGACTCTGCCAGGCATGGTGCCTGCC
GCACACTGCTACGCCGGTACACAGTTCGGCAACTTTGCCGGACAGTTAGGAGATGGGCGA
GCGACCAATTTAGGTGAGATCACGAACAAACGGGGCCAGAAATGGGAGCTGCAGTTGAAA
GGTGCTGGGTTGACCCCGTATTCCAGGACAGCAGACGGCCGGGCTGTTTTCCGGTCGTCC
ATTCGCGAGTACATCTGCAGCGAACATATGCACGCACTGGGTATTGCAACCACACGCGCA
GCCTCCCTAGTCACCTCAGACACTCTGGTGGTACGAGACCCCATGTATGACGGACACACC
ATAGAAGAACAGTCCACAGTAGTGTTACGGCTAGCCCCATCGTTCCTCCGCTTTGGCTCG
TGGGAGGTGTTTCTGGGCGAGGACGAAAGGACTGGACGTGCGGGGCCGTCGGCTGGTGCG
GAGCACTTTCCTCTGGCCAAGCAGATGCTAGACCACGTAGTGTCCACTCACTACCCTGAC
ATCTGGGCTGCCCATGACAACGACACAGACAGATACATTGCCTTCTTCCAGGAATTGGTC
GATCGCACGGCAGAGACCTGTGCTAAGTGGCAGGGTGTAGGGTTTGTGCACGGTGTGCTC
AACACAGATAACATGAGTATCCTGGGGCTGACCATTGACTATGGACCGTATGGCTTCATG
GGATACTTTGATTCGGATATGGTCCCCAATCACTCAGACACCACAGGACGGTATCGATAC
CAGAACCAGCCGGGTATCTGTAAATGGAACTTGACGCGACTGGCGCAGGCGTTAGACACC
TCAGGTGTCATTTGCATGTCTAACCTGTCACCAGTGATAGAGAACTACGACGCCGTGTTA
CGCCGACATTACAGTGCAACCATGCTAGCAAAGCTGGGTCTAATTCGGTCTGTAGAGGAA
TCCGACCGTGAGCTGGTGTCTGAGCTGTTTGCCACCATGAATGACACGGGGTGTGACATG
ACTGCGCTGTTCCGTGAGTTAGCGGACGTG
//
supercont1.1171:subseq(145,20000)	GeneWise	match	9375	12367	358.37	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	9375	9588	0.00	+	0	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	intron	9589	10015	0.00	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	10016	10264	0.00	+	2	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	intron	10265	10650	0.00	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	10651	10820	0.00	+	2	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	intron	10821	11336	0.00	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	11337	11509	0.00	+	0	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	intron	11510	11743	0.00	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	11744	11870	0.00	+	1	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	intron	11871	12250	0.00	+	.	supercont1.1171:subseq(145,20000)-genewise-prediction-1
supercont1.1171:subseq(145,20000)	GeneWise	cds	12251	12367	0.00	+	0	supercont1.1171:subseq(145,20000)-genewise-prediction-1
//