genewise output
Score 70.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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gi|262106269|gb   17 FSSWRRLPSSRFDNAVLRELPIDTEPKNFVRSAVSGACFSRVDPTPIAS 
                     F S   LP   FDN  L  LPID   +N+VR +V GACFS V+PTPI + 
                     FKSLENLP---FDNTALHTLPIDPIKENYVRRSVKGACFSLVEPTPIEN 
Contig6376:subs  513 tatcgacc   tgaagtcaccagcaagatgaaagaggttatggcacaga 
                     tactaatc   taacctactctactaaaatgggtagcgtgttaccctaa 
                     cactatct   tcctcgtctttctaggttgagttgtttccgaaattcat 


gi|262106269|gb   66 P                          LVVTSPNSLLLVGIELNESDSK 
                     P                          LV   P++L L+ ++ NE+  K 
                     P           E:R[agg]       LVCYCPSALALIDLDPNET--K 
Contig6376:subs  651 cAGGTAGATC  Intron 1   CAGGtgtttctgcgcagcgcaga  a 
                     c  <2-----[656  : 1135]-2> ttgagccctcttatacaac  a 
                     c                          gcttccgctccatctatac  g 


gi|262106269|gb   90 SQDEGVNGEGDDLQPIETLVPILAGNTLLPGAETAAQCYCG         
                       D                   L GN  +PG+ETAA CYCG         
                     RPD---------------FAEYLCGNKKIPGSETAAHCYCG         
Contig6376:subs 1197 acg               tggtctgaaaacgtgaggctttg         
                     gca               tcaatggaaatcgcacccagagg         
                     gat               tggcgcacggtgtggtcaccttt         


//
Making a R in phase 2 intron
>Contig6376:subseq(0,20000).pep
FKSLENLPFDNTALHTLPIDPIKENYVRRSVKGACFSLVEPTPIENPRLVCYCPSALALI
DLDPNETKRPDFAEYLCGNKKIPGSETAAHCYCG
//
>Contig6376:subseq(0,20000).[513:1274].sp
TTCAAATCCCTTGAAAATCTCCCTTTTGACAACACTGCCTTGCATACCCTTCCTATTGAC
CCTATAAAGGAGAATTATGTGAGAAGGAGTGTTAAGGGTGCTTGTTTCAGCTTGGTAGAA
CCAACTCCTATCGAAAATCCCAGGTTGGTCTGTTATTGCCCCTCGGCCCTTGCCCTCATA
GATCTCGATCCAAATGAAACCAAGAGGCCAGATTTTGCGGAGTACCTGTGCGGAAACAAG
AAGATTCCGGGTTCGGAGACTGCCGCACACTGCTATTGTGGT
//
Contig6376:subseq(0,20000)	GeneWise	match	513	1274	87.80	+	.	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	cds	513	655	0.00	+	0	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	intron	656	1135	0.00	+	.	Contig6376:subseq(0,20000)-genewise-prediction-1
Contig6376:subseq(0,20000)	GeneWise	cds	1136	1274	0.00	+	1	Contig6376:subseq(0,20000)-genewise-prediction-1
//