genewise output
Score 297.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|262106269|gb  106 ETLVPILAGNTLLPGAETAAQCYCGHQFGFFSGQLGDGAALYLGEVV-A 
                     + +    +GN  LPG   AA CY G QFG F+GQLGDG A  LGE+    
                     DNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNK 
supercont1.1171 8038 gaagcttagagaccgagcggcttggactgatggctgggcgaatggaaaa 
                     aatcaatggatctcgttcccagacgcatgatcgatgaggccatgatcaa 
                     ctacgcctctgtgacggtcacccctagccctcagaatgagctatgcgca 


gi|262106269|gb  154 VDERWELQLKGSGLTPYSRTA                          GR 
                       ++WELQLKG+GLTPYSRTA                          GR 
                     RGQKWELQLKGAGLTPYSRTA          D:D[gac]        GR 
supercont1.1171 8185 cgcatgcctagggtacttaagGGTGCGTT  Intron 1   CAGACgc 
                     ggaagatatagcgtccacgcc <1-----[8249 : 8675]-1>  gg 
                     gcgagggggattggcgtcgaa                          cg 


gi|262106269|gb  178 KVLRSTLREFLCSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKM 
                      V RS++RE++CSE+MHALG+ TTRA S+VTS  T V+RD +Y+G     
                     AVFRSSIREYICSEHMHALGIATTRAASLVTS-DTLVVRDPMYDGHTIE 
supercont1.1171 8684 ggtcttacgtatagcacgcgagaacggtcgat gacggcgcatggcaag 
                     cttgcctgaatggaatactgtcccgcccttcc actttgactaagacta 
                     ttcggctcgccccatgcagttacacaccacca ctggaaccgtcaccaa 


gi|262106269|gb  227 EPTAVVTRIAKSFLRFGSFEIFKDEDKLTGLA                  
                     E + VV R+A SFLRFGS+E+F  ED+ TG A                  
                     EQSTVVLRLAPSFLRFGSWEVFLGEDERTGRA                  
supercont1.1171 8828 gctaggtccgcttcctgttggtcggggaagcg                  
                     aacctttgtcccttgtgcgatttgaaagcggc                  
                     agcaagagacagccctcggggtgcgcagtatg                  


gi|262106269|gb  259                           PSAHLENKEEMMREMLDFTIRQY 
                                               PSA  E+   + ++MLD  +  + 
                               G:G[ggg]        PSAGAEH-FPLAKQMLDHVVSTH 
supercont1.1171 8924 GGTATGTC  Intron 2   CAGGGctggggc tccgacacgcggtac 
                      <1-----[8925 : 9310]-1>  cccgcaa tctcaattaattcca 
                                               ggttggc ttgcgggaccagctc 


gi|262106269|gb  283 YSEISGAR-----KYEKFFQEVVRRTAMLVAKWQ                
                     Y +I  A       Y  FFQE+V RTA   AKWQ                
                     YPDIWAAHDNDTDRYIAFFQELVDRTAETCAKWQ                
supercont1.1171 9379 tcgatggcgagagatagttcgtggcaggatgatc                
                     acatgccaaaacagatcttaattagccacgcaga                
                     ctccgtctcccacactcccgagctcgagcttggg                


gi|262106269|gb  312                        SIGFCHGVLNTDNMSIVGDTLDYGPF 
                                             +GF HGVLNTDNMSI+G T+DYGP+ 
                                            GVGFVHGVLNTDNMSILGLTIDYGPY 
supercont1.1171 9481 GTGTGGC  Intron 3   TAGgggtgcggcaagaaaacgcaagtgct 
                     <0-----[9481 : 9996]-0>gtgttagttacaatgttgtctaagca 
                                            tagtgctgccatcgtcgggctctagt 


gi|262106269|gb  338 GFMEHFDPKHICNTSDDRGRYRYEAQPEVCK                   
                     GFM +FD   + N SD  GRYRY+ QP +CK                   
                     GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK                   
supercont1.117110075 gtagttgtgagcactgaagctctcaccgata                   
                     gttgatacattcaacaccggagaaaacgtga                   
                     ccgacttgtgcctcaccaagtacgcggtcta                   


gi|262106269|gb  369                           NCGVLADQLGL--VTERAGLEPI 
                                               N   LA  L    V   + L P+ 
                                W:W[tgg]       NLTRLAQALDTSGVICMSNLSPV 
supercont1.117110168 TGGTAAGGG  Intron 4   CAGGataccgcgtgatggatatactcg 
                       <2-----[10170:10403]-2> atcgtcactaccgttgtcatcct 
                                               cggaggggaccatctcgtcgaag 


gi|262106269|gb  391 LESFDAVYEAEYMRLMREK                       LGL-SDE 
                     +E++DAV    Y   M  K                       LGL     
                     IENYDAVLRRHYSATMLAK                       LGLIRSV 
supercont1.117110474 agatgggtccctagaacgaGTAAGTC  Intron 5   CAGcgcactg 
                     taaaacttggaagccttca<0-----[10531:10910]-0>tgttgct 
                     agccccgacatctacgaag                       gtatgta 


gi|262106269|gb  416 EKEDKMLVDTLFDVLAFTGADFTCTFRYLSELDVFE              
                     E+ D+ LV  LF  +  TG D+T  FR L+++ V E              
                     EESDRELVSELFATMNDTGCDMTALFRELADVPVTE              
supercont1.117110932 ggtgcgcgtgctgaaagagtgaagctcgtgggcgag              
                     aacagattcattcctaacggatccttgatcatctca              
                     gacctgggtggtccgtcggtcgtggctgagcgtgtg              


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
>supercont1.1171:subseq(1485,19096).pep
DNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKRGQKWELQLKG
AGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTI
EEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLDHVVSTHYPDI
WAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLTIDYGPYGFMG
YFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSPVIENYDAVLR
RHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADVPVTE
//
>supercont1.1171:subseq(1485,19096).[8038:11039].sp
GACAATATAGCCCAGTACTTCAGTGGCAATGTGACTCTGCCAGGCATGGTGCCTGCCGCA
CACTGCTACGCCGGTACACAGTTCGGCAACTTTGCCGGACAGTTAGGAGATGGGCGAGCG
ACCAATTTAGGTGAGATCACGAACAAACGGGGCCAGAAATGGGAGCTGCAGTTGAAAGGT
GCTGGGTTGACCCCGTATTCCAGGACAGCAGACGGCCGGGCTGTTTTCCGGTCGTCCATT
CGCGAGTACATCTGCAGCGAACATATGCACGCACTGGGTATTGCAACCACACGCGCAGCC
TCCCTAGTCACCTCAGACACTCTGGTGGTACGAGACCCCATGTATGACGGACACACCATA
GAAGAACAGTCCACAGTAGTGTTACGGCTAGCCCCATCGTTCCTCCGCTTTGGCTCGTGG
GAGGTGTTTCTGGGCGAGGACGAAAGGACTGGACGTGCGGGGCCGTCGGCTGGTGCGGAG
CACTTTCCTCTGGCCAAGCAGATGCTAGACCACGTAGTGTCCACTCACTACCCTGACATC
TGGGCTGCCCATGACAACGACACAGACAGATACATTGCCTTCTTCCAGGAATTGGTCGAT
CGCACGGCAGAGACCTGTGCTAAGTGGCAGGGTGTAGGGTTTGTGCACGGTGTGCTCAAC
ACAGATAACATGAGTATCCTGGGGCTGACCATTGACTATGGACCGTATGGCTTCATGGGA
TACTTTGATTCGGATATGGTCCCCAATCACTCAGACACCACAGGACGGTATCGATACCAG
AACCAGCCGGGTATCTGTAAATGGAACTTGACGCGACTGGCGCAGGCGTTAGACACCTCA
GGTGTCATTTGCATGTCTAACCTGTCACCAGTGATAGAGAACTACGACGCCGTGTTACGC
CGACATTACAGTGCAACCATGCTAGCAAAGCTGGGTCTAATTCGGTCTGTAGAGGAATCC
GACCGTGAGCTGGTGTCTGAGCTGTTTGCCACCATGAATGACACGGGGTGTGACATGACT
GCGCTGTTCCGTGAGTTAGCGGACGTGCCTGTGACTGAG
//
supercont1.1171:subseq(1485,19096)	GeneWise	match	8038	11039	302.39	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	8038	8248	0.00	+	0	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	intron	8249	8675	0.00	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	8676	8924	0.00	+	2	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	intron	8925	9310	0.00	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	9311	9480	0.00	+	2	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	intron	9481	9996	0.00	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	9997	10169	0.00	+	0	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	intron	10170	10403	0.00	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	10404	10530	0.00	+	1	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	intron	10531	10910	0.00	+	.	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
supercont1.1171:subseq(1485,19096)	GeneWise	cds	10911	11039	0.00	+	0	supercont1.1171:subseq(1485,19096)-genewise-prediction-1
//