genewise output Score 376.83 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 48 LRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLV L+F N A++ALP E+ PG G+ R PGA + V+PTP+ P+ V LKFTNSAMKALPFESRAPGTVGS----RETPGAVWASVEPTPVTNPQTV supercont1.1171 6852 tataaagaagtctgaagcgagga agacgggtgaggcacgaaccag tatcagctactctaggccgctgg gaccgctgcgtaccctcacact gacactggacggcataaaacttt aagcgtggttcaggtgattatt SPP00000019_1.0 97 ALSEPALA LLGLGAPPAREAEAE--- + AL LL + P + + SHCMAALK LLDIPEPTNADEFTDLRD supercont1.1171 6987 tctaggcaGTACGAA Intron 1 CAGccgacgcaagggtagtcg cagtccta<0-----[7011 : 7986]-0>ttatcaccacaatcatga actgtacg ggtttacatgcacacgac SPP00000019_1.0 120 -AALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAT A +FSGN LPG PAAHCY G QFG FAGQLGDG A LGE+ NIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR supercont1.1171 8041 aagcttagagaccgagcggcttggactgatggctgggcgaatggaaaac atcaatggatctcgttcccagacgcatgatcgatgaggccatgatcaag tacgcctctgtgacggtcacccctagccctcagaatgagctatgcgcag SPP00000019_1.0 168 GERWELQLKGAGPTPFSRQA GRK G++WELQLKGAG TP+SR A GR GQKWELQLKGAGLTPYSRTA D:D[gac] GRA supercont1.1171 8188 gcatgcctagggtacttaagGGTGCGTT Intron 2 CAGACgcg gaagatatagcgtccacgcc <1-----[8249 : 8675]-1> ggc cgagggggattggcgtcgaa cgt SPP00000019_1.0 192 VLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQ V RSSIRE++CSE M LG+ TTRA + VTS++ VVRD +YDG+ EQ VFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTIEEQ supercont1.1171 8687 gtcttacgtatagcacgcgagaacggtcgatgacggcgcatggcaaggc ttgcctgaatggaatactgtcccgcccttccactttgactaagactaaa tcggctcgccccatgcagttacacaccaccactggaaccgtcaccaaag SPP00000019_1.0 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRA TVVLR+A +F+RFGS+E+F DE TGRA STVVLRLAPSFLRFGSWEVFLGEDERTGRA supercont1.1171 8834 taggtccgcttcctgttggtcggggaagcg cctttgtcccttgtgcgatttgaaagcggc caagagacagccctcggggtgcgcagtatg SPP00000019_1.0 271 PSVGRND--IRVQLLDYVISSFY PS G + Q+LD+V+S+ Y G:G[ggg] PSAGAEHFPLAKQMLDHVVSTHY supercont1.1171 8924 GGTATGTC Intron 3 CAGGGctggggctccgacacgcggtact <1-----[8925 : 9310]-1> cccgcaatctcaattaattccaa ggttggcttgcgggaccagctcc SPP00000019_1.0 293 PEIQAAHASDSVQRNAAFFREVTRRTARMVAEWQ P+I AAH +D+ R AFF+E+ RTA A+WQ PDIWAAHDNDT-DRYIAFFQELVDRTAETCAKWQ supercont1.1171 9382 cgatggcgaga gatagttcgtggcaggatgatc catgccaaaac agatcttaattagccacgcaga tccgtctccca cactcccgagctcgagcttggg SPP00000019_1.0 327 CVGFCHGVLNTDNMSILGLTIDYGPF VGF HGVLNTDNMSILGLTIDYGP+ GVGFVHGVLNTDNMSILGLTIDYGPY supercont1.1171 9481 GTGTGGC Intron 4 TAGgggtgcggcaagaaaacgcaagtgct <0-----[9481 : 9996]-0>gtgttagttacaatgttgtctaagca tagtgctgccatcgtcgggctctagt SPP00000019_1.0 353 GFLDRYDPDHVCNASDNTGRYAYSKQPEVCR GF+ +D D V N SD TGRY Y QP +C+ GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK supercont1.117110075 gtagttgtgagcactgaagctctcaccgata gttgatacattcaacaccggagaaaacgtga ccgacttgtgcctcaccaagtacgcggtcta SPP00000019_1.0 384 NLRKLAEALQPELPLELGE-AIL NL +LA+AL + + + W:W[tgg] NLTRLAQALDTSGVICMSNLSPV supercont1.117110168 TGGTAAGGG Intron 5 CAGGataccgcgtgatggatatactcg <2-----[10170:10403]-2> atcgtcactaccgttgtcatcct cggaggggaccatctcgtcgaag SPP00000019_1.0 407 AEEFDAEFQRHYLQKMRRK LGLVQVE E +DA ++RHY M K LGL++ IENYDAVLRRHYSATMLAK LGLIRSV supercont1.117110474 agatgggtccctagaacgaGTAAGTC Intron 6 CAGcgcactg taaaacttggaagccttca<0-----[10531:10910]-0>tgttgct agccccgacatctacgaag gtatgta SPP00000019_1.0 433 LEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVE---LESPGLAEFLA E D LVS+L TM+ TG D+T F L+ PV P L F+ EESDRELVSELFATMNDTGCDMTALFRELADVPVTEGTVNQPQLQRFIE supercont1.117110932 ggtgcgcgtgctgaaagagtgaagctcgtgggcgaggagacccccctag aacagattcattcctaacggatccttgatcatctcagctaacatagtta gacctgggtggtccgtcggtcgtggctgagcgtgtggtgtggggggtta SPP00000019_1.0 479 -RLMEQCA LEELRLAFRPQMDPR ++ C + +RP M DSILPLCC S:S[agt] SRLMAKRIRPDMPLA supercont1.117111079 gtacccttAGGTGTGTG Intron 7 CAGTtacagacaacgaccg acttctgg <2-----[11105:11484]-2> cgttcagtgcatctc ctcgagtc gacgtggtaacgcgc SPP00000019_1.0 502 QLSMMLMLAQSNP QLFALMGTRA + ++ L + P L++ G TMQRLIDLGEEKP -:G[ggc] ILLSYTGRTV supercont1.117111531 aacacagcgggacGGTGAGTC Intron 8 CAGGCaccatagaag ctagttatgaaac <1-----[11571:11798]-1> tttgacggct cggagctgtgaga tggccgagga SPP00000019_1.0 525 GIARELERVEQQSRLEQLSAAELQSRNQ---GHWADWLQAYRARLDKDL ++L +E + ++ ++ R+Q W WL Y RL +++ EYFKKL--IESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREV supercont1.117111831 gttaac agtaaagagagagggtacgccgcgatggtccctagctcagg aataat tacaaccaatacaatctgaagtgaaggtgtcaatagtagat gctggg tagcccctagcggtgcttcatgtcagtgggagctagatagg SPP00000019_1.0 571 E--GAGDAAAWQAEHVRVMHANNPKYVLRNYIAQ E A +A M NPK+ +N++AQ EVEPATSVSAMNTARKAKMATTNPKFTFKNHLAQ supercont1.117111972 gggcgaagtgaaagaagaagaaacatataaccgc atacccgtcctaccgacatcccacatctaaatca gggaactgatgctggagggccgtcgcgcgctgag SPP00000019_1.0 603 NAIEAAERGDFSEVRRVLKLLETPY AIE AE GD++E+ R+L ++ P+ EAIEMAENGDYTEIDRLLTVMCDPF supercont1.117112074 GTGATTT Intron 9 CAGggagaggaggtagagcctagatgct <0-----[12074:12402]-0>actatcaagaacatagttcttgact agtggtgcccccaccatgtggcttt // Making a D in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a S in phase 2 intron Making a G in phase 1 intron >supercont1.1171:subseq(1485,19096).pep LKFTNSAMKALPFESRAPGTVGSRETPGAVWASVEPTPVTNPQTVSHCMAALKLLDIPEP TNADEFTDLRDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR GQKWELQLKGAGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVV RDPMYDGHTIEEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLD HVVSTHYPDIWAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLT IDYGPYGFMGYFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSP VIENYDAVLRRHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADVP VTEGTVNQPQLQRFIEDSILPLCCSSRLMAKRIRPDMPLATMQRLIDLGEEKPGILLSYT GRTVEYFKKLIESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREVEVEPATSVS AMNTARKAKMATTNPKFTFKNHLAQEAIEMAENGDYTEIDRLLTVMCDPF // >supercont1.1171:subseq(1485,19096).[6852:12477].sp TTGAAATTCACAAACAGTGCGATGAAAGCCTTGCCGTTCGAAAGTAGAGCACCAGGAACC GTTGGTAGTAGAGAAACGCCCGGGGCTGTGTGGGCTAGTGTCGAACCGACGCCTGTGACA AATCCTCAAACTGTTTCACACTGTATGGCTGCACTCAAGCTGCTGGATATTCCTGAACCC ACAAATGCGGACGAATTCACAGACTTGCGAGACAATATAGCCCAGTACTTCAGTGGCAAT GTGACTCTGCCAGGCATGGTGCCTGCCGCACACTGCTACGCCGGTACACAGTTCGGCAAC TTTGCCGGACAGTTAGGAGATGGGCGAGCGACCAATTTAGGTGAGATCACGAACAAACGG GGCCAGAAATGGGAGCTGCAGTTGAAAGGTGCTGGGTTGACCCCGTATTCCAGGACAGCA GACGGCCGGGCTGTTTTCCGGTCGTCCATTCGCGAGTACATCTGCAGCGAACATATGCAC GCACTGGGTATTGCAACCACACGCGCAGCCTCCCTAGTCACCTCAGACACTCTGGTGGTA CGAGACCCCATGTATGACGGACACACCATAGAAGAACAGTCCACAGTAGTGTTACGGCTA GCCCCATCGTTCCTCCGCTTTGGCTCGTGGGAGGTGTTTCTGGGCGAGGACGAAAGGACT GGACGTGCGGGGCCGTCGGCTGGTGCGGAGCACTTTCCTCTGGCCAAGCAGATGCTAGAC CACGTAGTGTCCACTCACTACCCTGACATCTGGGCTGCCCATGACAACGACACAGACAGA TACATTGCCTTCTTCCAGGAATTGGTCGATCGCACGGCAGAGACCTGTGCTAAGTGGCAG GGTGTAGGGTTTGTGCACGGTGTGCTCAACACAGATAACATGAGTATCCTGGGGCTGACC ATTGACTATGGACCGTATGGCTTCATGGGATACTTTGATTCGGATATGGTCCCCAATCAC TCAGACACCACAGGACGGTATCGATACCAGAACCAGCCGGGTATCTGTAAATGGAACTTG ACGCGACTGGCGCAGGCGTTAGACACCTCAGGTGTCATTTGCATGTCTAACCTGTCACCA GTGATAGAGAACTACGACGCCGTGTTACGCCGACATTACAGTGCAACCATGCTAGCAAAG CTGGGTCTAATTCGGTCTGTAGAGGAATCCGACCGTGAGCTGGTGTCTGAGCTGTTTGCC ACCATGAATGACACGGGGTGTGACATGACTGCGCTGTTCCGTGAGTTAGCGGACGTGCCT GTGACTGAGGGGACTGTGAATCAGCCGCAGCTGCAGCGGTTTATTGAAGACTCTATCCTG CCACTGTGTTGCAGTTCGAGACTCATGGCTAAGCGGATTAGACCAGACATGCCCCTGGCC ACCATGCAGAGACTGATCGATCTGGGTGAGGAAAAGCCAGGCATTCTGCTGAGCTACACG GGAAGGACGGTAGAGTACTTTAAGAAGCTGATTGAATCGAACAACACCGCCAATGAAATG GACACGGAGGATGTGTCCATTCGTGACCAACGTGTGCGTGACAAATGGGGTGTGTGGCTG CCACAGTACATTGAACGGTTACATAGAGAGGTGGAGGTGGAGCCAGCAACCAGTGTGTCA GCTATGAACACTGCGAGGAAAGCGAAGATGGCCACCACGAATCCCAAGTTCACGTTCAAG AACCATCTGGCACAGGAAGCGATTGAGATGGCTGAGAACGGCGACTACACCGAAATCGAC CGACTTTTGACTGTGATGTGCGATCCTTTT // supercont1.1171:subseq(1485,19096) GeneWise match 6852 12477 389.81 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 6852 7010 0.00 + 0 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 7011 7986 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 7987 8248 0.00 + 0 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 8249 8675 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 8676 8924 0.00 + 2 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 8925 9310 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 9311 9480 0.00 + 2 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 9481 9996 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 9997 10169 0.00 + 0 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 10170 10403 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 10404 10530 0.00 + 1 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 10531 10910 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 10911 11104 0.00 + 0 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 11105 11484 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 11485 11570 0.00 + 1 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 11571 11798 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 11799 12073 0.00 + 2 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise intron 12074 12402 0.00 + . supercont1.1171:subseq(1485,19096)-genewise-prediction-1 supercont1.1171:subseq(1485,19096) GeneWise cds 12403 12477 0.00 + 0 supercont1.1171:subseq(1485,19096)-genewise-prediction-1 //