genewise output Score 376.83 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 48 LRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLV L+F N A++ALP E+ PG G+ R PGA + V+PTP+ P+ V LKFTNSAMKALPFESRAPGTVGS----RETPGAVWASVEPTPVTNPQTV supercont1.1171 8337 tataaagaagtctgaagcgagga agacgggtgaggcacgaaccag tatcagctactctaggccgctgg gaccgctgcgtaccctcacact gacactggacggcataaaacttt aagcgtggttcaggtgattatt SPP00000019_1.0 97 ALSEPALA LLGLGAPPAREAEAE--- + AL LL + P + + SHCMAALK LLDIPEPTNADEFTDLRD supercont1.1171 8472 tctaggcaGTACGAA Intron 1 CAGccgacgcaagggtagtcg cagtccta<0-----[8496 : 9471]-0>ttatcaccacaatcatga actgtacg ggtttacatgcacacgac SPP00000019_1.0 120 -AALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAT A +FSGN LPG PAAHCY G QFG FAGQLGDG A LGE+ NIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR supercont1.1171 9526 aagcttagagaccgagcggcttggactgatggctgggcgaatggaaaac atcaatggatctcgttcccagacgcatgatcgatgaggccatgatcaag tacgcctctgtgacggtcacccctagccctcagaatgagctatgcgcag SPP00000019_1.0 168 GERWELQLKGAGPTPFSRQA GRK G++WELQLKGAG TP+SR A GR GQKWELQLKGAGLTPYSRTA D:D[gac] GRA supercont1.1171 9673 gcatgcctagggtacttaagGGTGCGTT Intron 2 CAGACgcg gaagatatagcgtccacgcc <1-----[9734 :10160]-1> ggc cgagggggattggcgtcgaa cgt SPP00000019_1.0 192 VLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQ V RSSIRE++CSE M LG+ TTRA + VTS++ VVRD +YDG+ EQ VFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTIEEQ supercont1.117110172 gtcttacgtatagcacgcgagaacggtcgatgacggcgcatggcaaggc ttgcctgaatggaatactgtcccgcccttccactttgactaagactaaa tcggctcgccccatgcagttacacaccaccactggaaccgtcaccaaag SPP00000019_1.0 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRA TVVLR+A +F+RFGS+E+F DE TGRA STVVLRLAPSFLRFGSWEVFLGEDERTGRA supercont1.117110319 taggtccgcttcctgttggtcggggaagcg cctttgtcccttgtgcgatttgaaagcggc caagagacagccctcggggtgcgcagtatg SPP00000019_1.0 271 PSVGRND--IRVQLLDYVISSFY PS G + Q+LD+V+S+ Y G:G[ggg] PSAGAEHFPLAKQMLDHVVSTHY supercont1.117110409 GGTATGTC Intron 3 CAGGGctggggctccgacacgcggtact <1-----[10410:10795]-1> cccgcaatctcaattaattccaa ggttggcttgcgggaccagctcc SPP00000019_1.0 293 PEIQAAHASDSVQRNAAFFREVTRRTARMVAEWQ P+I AAH +D+ R AFF+E+ RTA A+WQ PDIWAAHDNDT-DRYIAFFQELVDRTAETCAKWQ supercont1.117110867 cgatggcgaga gatagttcgtggcaggatgatc catgccaaaac agatcttaattagccacgcaga tccgtctccca cactcccgagctcgagcttggg SPP00000019_1.0 327 CVGFCHGVLNTDNMSILGLTIDYGPF VGF HGVLNTDNMSILGLTIDYGP+ GVGFVHGVLNTDNMSILGLTIDYGPY supercont1.117110966 GTGTGGC Intron 4 TAGgggtgcggcaagaaaacgcaagtgct <0-----[10966:11481]-0>gtgttagttacaatgttgtctaagca tagtgctgccatcgtcgggctctagt SPP00000019_1.0 353 GFLDRYDPDHVCNASDNTGRYAYSKQPEVCR GF+ +D D V N SD TGRY Y QP +C+ GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK supercont1.117111560 gtagttgtgagcactgaagctctcaccgata gttgatacattcaacaccggagaaaacgtga ccgacttgtgcctcaccaagtacgcggtcta SPP00000019_1.0 384 NLRKLAEALQPELPLELGE-AIL NL +LA+AL + + + W:W[tgg] NLTRLAQALDTSGVICMSNLSPV supercont1.117111653 TGGTAAGGG Intron 5 CAGGataccgcgtgatggatatactcg <2-----[11655:11888]-2> atcgtcactaccgttgtcatcct cggaggggaccatctcgtcgaag SPP00000019_1.0 407 AEEFDAEFQRHYLQKMRRK LGLVQVE E +DA ++RHY M K LGL++ IENYDAVLRRHYSATMLAK LGLIRSV supercont1.117111959 agatgggtccctagaacgaGTAAGTC Intron 6 CAGcgcactg taaaacttggaagccttca<0-----[12016:12395]-0>tgttgct agccccgacatctacgaag gtatgta SPP00000019_1.0 433 LEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVE---LESPGLAEFLA E D LVS+L TM+ TG D+T F L+ PV P L F+ EESDRELVSELFATMNDTGCDMTALFRELADVPVTEGTVNQPQLQRFIE supercont1.117112417 ggtgcgcgtgctgaaagagtgaagctcgtgggcgaggagacccccctag aacagattcattcctaacggatccttgatcatctcagctaacatagtta gacctgggtggtccgtcggtcgtggctgagcgtgtggtgtggggggtta SPP00000019_1.0 479 -RLMEQCA LEELRLAFRPQMDPR ++ C + +RP M DSILPLCC S:S[agt] SRLMAKRIRPDMPLA supercont1.117112564 gtacccttAGGTGTGTG Intron 7 CAGTtacagacaacgaccg acttctgg <2-----[12590:12969]-2> cgttcagtgcatctc ctcgagtc gacgtggtaacgcgc SPP00000019_1.0 502 QLSMMLMLAQSNP QLFALMGTRA + ++ L + P L++ G TMQRLIDLGEEKP -:G[ggc] ILLSYTGRTV supercont1.117113016 aacacagcgggacGGTGAGTC Intron 8 CAGGCaccatagaag ctagttatgaaac <1-----[13056:13283]-1> tttgacggct cggagctgtgaga tggccgagga SPP00000019_1.0 525 GIARELERVEQQSRLEQLSAAELQSRNQ---GHWADWLQAYRARLDKDL ++L +E + ++ ++ R+Q W WL Y RL +++ EYFKKL--IESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREV supercont1.117113316 gttaac agtaaagagagagggtacgccgcgatggtccctagctcagg aataat tacaaccaatacaatctgaagtgaaggtgtcaatagtagat gctggg tagcccctagcggtgcttcatgtcagtgggagctagatagg SPP00000019_1.0 571 E--GAGDAAAWQAEHVRVMHANNPKYVLRNYIAQ E A +A M NPK+ +N++AQ EVEPATSVSAMNTARKAKMATTNPKFTFKNHLAQ supercont1.117113457 gggcgaagtgaaagaagaagaaacatataaccgc atacccgtcctaccgacatcccacatctaaatca gggaactgatgctggagggccgtcgcgcgctgag SPP00000019_1.0 603 NAIEAAERGDFSEVRRVLKLLETPY AIE AE GD++E+ R+L ++ P+ EAIEMAENGDYTEIDRLLTVMCDPF supercont1.117113559 GTGATTT Intron 9 CAGggagaggaggtagagcctagatgct <0-----[13559:13887]-0>actatcaagaacatagttcttgact agtggtgcccccaccatgtggcttt // Making a D in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a S in phase 2 intron Making a G in phase 1 intron >supercont1.1171:subseq(0,20000).pep LKFTNSAMKALPFESRAPGTVGSRETPGAVWASVEPTPVTNPQTVSHCMAALKLLDIPEP TNADEFTDLRDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR GQKWELQLKGAGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVV RDPMYDGHTIEEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLD HVVSTHYPDIWAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLT IDYGPYGFMGYFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSP VIENYDAVLRRHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADVP VTEGTVNQPQLQRFIEDSILPLCCSSRLMAKRIRPDMPLATMQRLIDLGEEKPGILLSYT GRTVEYFKKLIESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREVEVEPATSVS AMNTARKAKMATTNPKFTFKNHLAQEAIEMAENGDYTEIDRLLTVMCDPF // >supercont1.1171:subseq(0,20000).[8337:13962].sp TTGAAATTCACAAACAGTGCGATGAAAGCCTTGCCGTTCGAAAGTAGAGCACCAGGAACC GTTGGTAGTAGAGAAACGCCCGGGGCTGTGTGGGCTAGTGTCGAACCGACGCCTGTGACA AATCCTCAAACTGTTTCACACTGTATGGCTGCACTCAAGCTGCTGGATATTCCTGAACCC ACAAATGCGGACGAATTCACAGACTTGCGAGACAATATAGCCCAGTACTTCAGTGGCAAT GTGACTCTGCCAGGCATGGTGCCTGCCGCACACTGCTACGCCGGTACACAGTTCGGCAAC TTTGCCGGACAGTTAGGAGATGGGCGAGCGACCAATTTAGGTGAGATCACGAACAAACGG GGCCAGAAATGGGAGCTGCAGTTGAAAGGTGCTGGGTTGACCCCGTATTCCAGGACAGCA GACGGCCGGGCTGTTTTCCGGTCGTCCATTCGCGAGTACATCTGCAGCGAACATATGCAC GCACTGGGTATTGCAACCACACGCGCAGCCTCCCTAGTCACCTCAGACACTCTGGTGGTA CGAGACCCCATGTATGACGGACACACCATAGAAGAACAGTCCACAGTAGTGTTACGGCTA GCCCCATCGTTCCTCCGCTTTGGCTCGTGGGAGGTGTTTCTGGGCGAGGACGAAAGGACT GGACGTGCGGGGCCGTCGGCTGGTGCGGAGCACTTTCCTCTGGCCAAGCAGATGCTAGAC CACGTAGTGTCCACTCACTACCCTGACATCTGGGCTGCCCATGACAACGACACAGACAGA TACATTGCCTTCTTCCAGGAATTGGTCGATCGCACGGCAGAGACCTGTGCTAAGTGGCAG GGTGTAGGGTTTGTGCACGGTGTGCTCAACACAGATAACATGAGTATCCTGGGGCTGACC ATTGACTATGGACCGTATGGCTTCATGGGATACTTTGATTCGGATATGGTCCCCAATCAC TCAGACACCACAGGACGGTATCGATACCAGAACCAGCCGGGTATCTGTAAATGGAACTTG ACGCGACTGGCGCAGGCGTTAGACACCTCAGGTGTCATTTGCATGTCTAACCTGTCACCA GTGATAGAGAACTACGACGCCGTGTTACGCCGACATTACAGTGCAACCATGCTAGCAAAG CTGGGTCTAATTCGGTCTGTAGAGGAATCCGACCGTGAGCTGGTGTCTGAGCTGTTTGCC ACCATGAATGACACGGGGTGTGACATGACTGCGCTGTTCCGTGAGTTAGCGGACGTGCCT GTGACTGAGGGGACTGTGAATCAGCCGCAGCTGCAGCGGTTTATTGAAGACTCTATCCTG CCACTGTGTTGCAGTTCGAGACTCATGGCTAAGCGGATTAGACCAGACATGCCCCTGGCC ACCATGCAGAGACTGATCGATCTGGGTGAGGAAAAGCCAGGCATTCTGCTGAGCTACACG GGAAGGACGGTAGAGTACTTTAAGAAGCTGATTGAATCGAACAACACCGCCAATGAAATG GACACGGAGGATGTGTCCATTCGTGACCAACGTGTGCGTGACAAATGGGGTGTGTGGCTG CCACAGTACATTGAACGGTTACATAGAGAGGTGGAGGTGGAGCCAGCAACCAGTGTGTCA GCTATGAACACTGCGAGGAAAGCGAAGATGGCCACCACGAATCCCAAGTTCACGTTCAAG AACCATCTGGCACAGGAAGCGATTGAGATGGCTGAGAACGGCGACTACACCGAAATCGAC CGACTTTTGACTGTGATGTGCGATCCTTTT // supercont1.1171:subseq(0,20000) GeneWise match 8337 13962 389.81 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 8337 8495 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 8496 9471 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 9472 9733 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 9734 10160 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 10161 10409 0.00 + 2 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 10410 10795 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 10796 10965 0.00 + 2 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 10966 11481 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 11482 11654 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 11655 11888 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 11889 12015 0.00 + 1 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 12016 12395 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 12396 12589 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 12590 12969 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 12970 13055 0.00 + 1 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 13056 13283 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 13284 13558 0.00 + 2 supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise intron 13559 13887 0.00 + . supercont1.1171:subseq(0,20000)-genewise-prediction-1 supercont1.1171:subseq(0,20000) GeneWise cds 13888 13962 0.00 + 0 supercont1.1171:subseq(0,20000)-genewise-prediction-1 //