genewise output Score 376.83 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 48 LRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLV L+F N A++ALP E+ PG G+ R PGA + V+PTP+ P+ V LKFTNSAMKALPFESRAPGTVGS----RETPGAVWASVEPTPVTNPQTV supercont1.1171 8177 tataaagaagtctgaagcgagga agacgggtgaggcacgaaccag tatcagctactctaggccgctgg gaccgctgcgtaccctcacact gacactggacggcataaaacttt aagcgtggttcaggtgattatt SPP00000019_1.0 97 ALSEPALA LLGLGAPPAREAEAE--- + AL LL + P + + SHCMAALK LLDIPEPTNADEFTDLRD supercont1.1171 8312 tctaggcaGTACGAA Intron 1 CAGccgacgcaagggtagtcg cagtccta<0-----[8336 : 9311]-0>ttatcaccacaatcatga actgtacg ggtttacatgcacacgac SPP00000019_1.0 120 -AALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAT A +FSGN LPG PAAHCY G QFG FAGQLGDG A LGE+ NIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR supercont1.1171 9366 aagcttagagaccgagcggcttggactgatggctgggcgaatggaaaac atcaatggatctcgttcccagacgcatgatcgatgaggccatgatcaag tacgcctctgtgacggtcacccctagccctcagaatgagctatgcgcag SPP00000019_1.0 168 GERWELQLKGAGPTPFSRQA GRK G++WELQLKGAG TP+SR A GR GQKWELQLKGAGLTPYSRTA D:D[gac] GRA supercont1.1171 9513 gcatgcctagggtacttaagGGTGCGTT Intron 2 CAGACgcg gaagatatagcgtccacgcc <1-----[9574 :10000]-1> ggc cgagggggattggcgtcgaa cgt SPP00000019_1.0 192 VLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQ V RSSIRE++CSE M LG+ TTRA + VTS++ VVRD +YDG+ EQ VFRSSIREYICSEHMHALGIATTRAASLVTSDTLVVRDPMYDGHTIEEQ supercont1.117110012 gtcttacgtatagcacgcgagaacggtcgatgacggcgcatggcaaggc ttgcctgaatggaatactgtcccgcccttccactttgactaagactaaa tcggctcgccccatgcagttacacaccaccactggaaccgtcaccaaag SPP00000019_1.0 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRA TVVLR+A +F+RFGS+E+F DE TGRA STVVLRLAPSFLRFGSWEVFLGEDERTGRA supercont1.117110159 taggtccgcttcctgttggtcggggaagcg cctttgtcccttgtgcgatttgaaagcggc caagagacagccctcggggtgcgcagtatg SPP00000019_1.0 271 PSVGRND--IRVQLLDYVISSFY PS G + Q+LD+V+S+ Y G:G[ggg] PSAGAEHFPLAKQMLDHVVSTHY supercont1.117110249 GGTATGTC Intron 3 CAGGGctggggctccgacacgcggtact <1-----[10250:10635]-1> cccgcaatctcaattaattccaa ggttggcttgcgggaccagctcc SPP00000019_1.0 293 PEIQAAHASDSVQRNAAFFREVTRRTARMVAEWQ P+I AAH +D+ R AFF+E+ RTA A+WQ PDIWAAHDNDT-DRYIAFFQELVDRTAETCAKWQ supercont1.117110707 cgatggcgaga gatagttcgtggcaggatgatc catgccaaaac agatcttaattagccacgcaga tccgtctccca cactcccgagctcgagcttggg SPP00000019_1.0 327 CVGFCHGVLNTDNMSILGLTIDYGPF VGF HGVLNTDNMSILGLTIDYGP+ GVGFVHGVLNTDNMSILGLTIDYGPY supercont1.117110806 GTGTGGC Intron 4 TAGgggtgcggcaagaaaacgcaagtgct <0-----[10806:11321]-0>gtgttagttacaatgttgtctaagca tagtgctgccatcgtcgggctctagt SPP00000019_1.0 353 GFLDRYDPDHVCNASDNTGRYAYSKQPEVCR GF+ +D D V N SD TGRY Y QP +C+ GFMGYFDSDMVPNHSDTTGRYRYQNQPGICK supercont1.117111400 gtagttgtgagcactgaagctctcaccgata gttgatacattcaacaccggagaaaacgtga ccgacttgtgcctcaccaagtacgcggtcta SPP00000019_1.0 384 NLRKLAEALQPELPLELGE-AIL NL +LA+AL + + + W:W[tgg] NLTRLAQALDTSGVICMSNLSPV supercont1.117111493 TGGTAAGGG Intron 5 CAGGataccgcgtgatggatatactcg <2-----[11495:11728]-2> atcgtcactaccgttgtcatcct cggaggggaccatctcgtcgaag SPP00000019_1.0 407 AEEFDAEFQRHYLQKMRRK LGLVQVE E +DA ++RHY M K LGL++ IENYDAVLRRHYSATMLAK LGLIRSV supercont1.117111799 agatgggtccctagaacgaGTAAGTC Intron 6 CAGcgcactg taaaacttggaagccttca<0-----[11856:12235]-0>tgttgct agccccgacatctacgaag gtatgta SPP00000019_1.0 433 LEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVE---LESPGLAEFLA E D LVS+L TM+ TG D+T F L+ PV P L F+ EESDRELVSELFATMNDTGCDMTALFRELADVPVTEGTVNQPQLQRFIE supercont1.117112257 ggtgcgcgtgctgaaagagtgaagctcgtgggcgaggagacccccctag aacagattcattcctaacggatccttgatcatctcagctaacatagtta gacctgggtggtccgtcggtcgtggctgagcgtgtggtgtggggggtta SPP00000019_1.0 479 -RLMEQCA LEELRLAFRPQMDPR ++ C + +RP M DSILPLCC S:S[agt] SRLMAKRIRPDMPLA supercont1.117112404 gtacccttAGGTGTGTG Intron 7 CAGTtacagacaacgaccg acttctgg <2-----[12430:12809]-2> cgttcagtgcatctc ctcgagtc gacgtggtaacgcgc SPP00000019_1.0 502 QLSMMLMLAQSNP QLFALMGTRA + ++ L + P L++ G TMQRLIDLGEEKP -:G[ggc] ILLSYTGRTV supercont1.117112856 aacacagcgggacGGTGAGTC Intron 8 CAGGCaccatagaag ctagttatgaaac <1-----[12896:13123]-1> tttgacggct cggagctgtgaga tggccgagga SPP00000019_1.0 525 GIARELERVEQQSRLEQLSAAELQSRNQ---GHWADWLQAYRARLDKDL ++L +E + ++ ++ R+Q W WL Y RL +++ EYFKKL--IESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREV supercont1.117113156 gttaac agtaaagagagagggtacgccgcgatggtccctagctcagg aataat tacaaccaatacaatctgaagtgaaggtgtcaatagtagat gctggg tagcccctagcggtgcttcatgtcagtgggagctagatagg SPP00000019_1.0 571 E--GAGDAAAWQAEHVRVMHANNPKYVLRNYIAQ E A +A M NPK+ +N++AQ EVEPATSVSAMNTARKAKMATTNPKFTFKNHLAQ supercont1.117113297 gggcgaagtgaaagaagaagaaacatataaccgc atacccgtcctaccgacatcccacatctaaatca gggaactgatgctggagggccgtcgcgcgctgag SPP00000019_1.0 603 NAIEAAERGDFSEVRRVLKLLETPY AIE AE GD++E+ R+L ++ P+ EAIEMAENGDYTEIDRLLTVMCDPF supercont1.117113399 GTGATTT Intron 9 CAGggagaggaggtagagcctagatgct <0-----[13399:13727]-0>actatcaagaacatagttcttgact agtggtgcccccaccatgtggcttt // Making a D in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a S in phase 2 intron Making a G in phase 1 intron >supercont1.1171:subseq(160,20000).pep LKFTNSAMKALPFESRAPGTVGSRETPGAVWASVEPTPVTNPQTVSHCMAALKLLDIPEP TNADEFTDLRDNIAQYFSGNVTLPGMVPAAHCYAGTQFGNFAGQLGDGRATNLGEITNKR GQKWELQLKGAGLTPYSRTADGRAVFRSSIREYICSEHMHALGIATTRAASLVTSDTLVV RDPMYDGHTIEEQSTVVLRLAPSFLRFGSWEVFLGEDERTGRAGPSAGAEHFPLAKQMLD HVVSTHYPDIWAAHDNDTDRYIAFFQELVDRTAETCAKWQGVGFVHGVLNTDNMSILGLT IDYGPYGFMGYFDSDMVPNHSDTTGRYRYQNQPGICKWNLTRLAQALDTSGVICMSNLSP VIENYDAVLRRHYSATMLAKLGLIRSVEESDRELVSELFATMNDTGCDMTALFRELADVP VTEGTVNQPQLQRFIEDSILPLCCSSRLMAKRIRPDMPLATMQRLIDLGEEKPGILLSYT GRTVEYFKKLIESNNTANEMDTEDVSIRDQRVRDKWGVWLPQYIERLHREVEVEPATSVS AMNTARKAKMATTNPKFTFKNHLAQEAIEMAENGDYTEIDRLLTVMCDPF // >supercont1.1171:subseq(160,20000).[8177:13802].sp TTGAAATTCACAAACAGTGCGATGAAAGCCTTGCCGTTCGAAAGTAGAGCACCAGGAACC GTTGGTAGTAGAGAAACGCCCGGGGCTGTGTGGGCTAGTGTCGAACCGACGCCTGTGACA AATCCTCAAACTGTTTCACACTGTATGGCTGCACTCAAGCTGCTGGATATTCCTGAACCC ACAAATGCGGACGAATTCACAGACTTGCGAGACAATATAGCCCAGTACTTCAGTGGCAAT GTGACTCTGCCAGGCATGGTGCCTGCCGCACACTGCTACGCCGGTACACAGTTCGGCAAC TTTGCCGGACAGTTAGGAGATGGGCGAGCGACCAATTTAGGTGAGATCACGAACAAACGG GGCCAGAAATGGGAGCTGCAGTTGAAAGGTGCTGGGTTGACCCCGTATTCCAGGACAGCA GACGGCCGGGCTGTTTTCCGGTCGTCCATTCGCGAGTACATCTGCAGCGAACATATGCAC GCACTGGGTATTGCAACCACACGCGCAGCCTCCCTAGTCACCTCAGACACTCTGGTGGTA CGAGACCCCATGTATGACGGACACACCATAGAAGAACAGTCCACAGTAGTGTTACGGCTA GCCCCATCGTTCCTCCGCTTTGGCTCGTGGGAGGTGTTTCTGGGCGAGGACGAAAGGACT GGACGTGCGGGGCCGTCGGCTGGTGCGGAGCACTTTCCTCTGGCCAAGCAGATGCTAGAC CACGTAGTGTCCACTCACTACCCTGACATCTGGGCTGCCCATGACAACGACACAGACAGA TACATTGCCTTCTTCCAGGAATTGGTCGATCGCACGGCAGAGACCTGTGCTAAGTGGCAG GGTGTAGGGTTTGTGCACGGTGTGCTCAACACAGATAACATGAGTATCCTGGGGCTGACC ATTGACTATGGACCGTATGGCTTCATGGGATACTTTGATTCGGATATGGTCCCCAATCAC TCAGACACCACAGGACGGTATCGATACCAGAACCAGCCGGGTATCTGTAAATGGAACTTG ACGCGACTGGCGCAGGCGTTAGACACCTCAGGTGTCATTTGCATGTCTAACCTGTCACCA GTGATAGAGAACTACGACGCCGTGTTACGCCGACATTACAGTGCAACCATGCTAGCAAAG CTGGGTCTAATTCGGTCTGTAGAGGAATCCGACCGTGAGCTGGTGTCTGAGCTGTTTGCC ACCATGAATGACACGGGGTGTGACATGACTGCGCTGTTCCGTGAGTTAGCGGACGTGCCT GTGACTGAGGGGACTGTGAATCAGCCGCAGCTGCAGCGGTTTATTGAAGACTCTATCCTG CCACTGTGTTGCAGTTCGAGACTCATGGCTAAGCGGATTAGACCAGACATGCCCCTGGCC ACCATGCAGAGACTGATCGATCTGGGTGAGGAAAAGCCAGGCATTCTGCTGAGCTACACG GGAAGGACGGTAGAGTACTTTAAGAAGCTGATTGAATCGAACAACACCGCCAATGAAATG GACACGGAGGATGTGTCCATTCGTGACCAACGTGTGCGTGACAAATGGGGTGTGTGGCTG CCACAGTACATTGAACGGTTACATAGAGAGGTGGAGGTGGAGCCAGCAACCAGTGTGTCA GCTATGAACACTGCGAGGAAAGCGAAGATGGCCACCACGAATCCCAAGTTCACGTTCAAG AACCATCTGGCACAGGAAGCGATTGAGATGGCTGAGAACGGCGACTACACCGAAATCGAC CGACTTTTGACTGTGATGTGCGATCCTTTT // supercont1.1171:subseq(160,20000) GeneWise match 8177 13802 389.81 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 8177 8335 0.00 + 0 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 8336 9311 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 9312 9573 0.00 + 0 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 9574 10000 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 10001 10249 0.00 + 2 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 10250 10635 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 10636 10805 0.00 + 2 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 10806 11321 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 11322 11494 0.00 + 0 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 11495 11728 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 11729 11855 0.00 + 1 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 11856 12235 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 12236 12429 0.00 + 0 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 12430 12809 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 12810 12895 0.00 + 1 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 12896 13123 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 13124 13398 0.00 + 2 supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise intron 13399 13727 0.00 + . supercont1.1171:subseq(160,20000)-genewise-prediction-1 supercont1.1171:subseq(160,20000) GeneWise cds 13728 13802 0.00 + 0 supercont1.1171:subseq(160,20000)-genewise-prediction-1 //