
genewise output
Score 17.22 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000116_1.0    3 LLLLLLVAASA                                       
                     LLLLL++AA+A                                       
                     LLLLLMLAATA                                       
Cf_Contig1035:s 5485 cccccacggag                                       
                     tttttttcccc                                       
                     ggggggtggtt                                       


//
>Cf_Contig1035:subseq(646,20646).pep
LLLLLMLAATA
//
Cf_Contig1035:subseq(646,20646)	GeneWise	match	5485	5517	17.22	+	.	Cf_Contig1035:subseq(646,20646)-genewise-prediction-1
Cf_Contig1035:subseq(646,20646)	GeneWise	cds	5485	5517	0.00	+	0	Cf_Contig1035:subseq(646,20646)-genewise-prediction-1
//

genewise output
Score 47.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000116_1.0   50 GYRRVFEEYMRVISQRYP---DIRIEGENYLPQPIYRHIASFLSVFKLV 
                     GY + F+E  + + +  P    +RI G  Y   P+   +A   S   +  
                     GYAKYFDEMKQHLQRSLPNAQEVRIVGGTYPTPPLRAAVAKACSFSFMG 
Cf_Contig1035:s-9973 gtgattggaaccccctccagcggcagggatcaccccggggagtttttag 
                     gacaataataaatagctcacaatgttggcacccctgcctcacgctcttg 
                     acggcccggggcgggtgccggggcccccccgaacccccccggccctcgt 


SPP00000116_1.0   96 LIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCM 
                      +GL + G       G+  P I  +  + +        FL N++ N  + 
                     ALGLALAGPQ----LGILPPVIVNFLNQQRGMV-IGAGFLLNIVGNSLV 
Cf_Contig1035:s-9826 gcgcgcggcc    cgacccgagatcacccgag agggtccaaggatcg 
                     ctgtctcgca    tgttcctttattaaaggtt tgcgtttattgactt 
                     gggccgacgg    accgttccgctgcggaggg tgtccgcccccctcc 


SPP00000116_1.0  145 STGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDS     
                      TGAFE++L+   ++SKL++G +P + ++ +I+  +  L  + DS     
                     QTGAFEVSLDGTLIFSKLQTGSVPPVAEVRRIIIEKTLLEQYGDS     
Cf_Contig1035:s-9694 caggtggtcggacattaccagtgccggggccaaagaaccgctggt     
                     acgctatctagctttcatacgctcctcatggtttaacttaaagac     
                     gtcctggggttggccggggcctgtacgggcccccgggggggcccg     


//
>Cf_Contig1035:subseq(646,20646).pep
GYAKYFDEMKQHLQRSLPNAQEVRIVGGTYPTPPLRAAVAKACSFSFMGALGLALAGPQL
GILPPVIVNFLNQQRGMVIGAGFLLNIVGNSLVQTGAFEVSLDGTLIFSKLQTGSVPPVA
EVRRIIIEKTLLEQYGDS
//
Cf_Contig1035:subseq(646,20646)	GeneWise	match	9973	9560	52.45	-	.	Cf_Contig1035:subseq(646,20646)-genewise-prediction-1
Cf_Contig1035:subseq(646,20646)	GeneWise	cds	9973	9560	0.00	-	0	Cf_Contig1035:subseq(646,20646)-genewise-prediction-1
//
