Command line: [exonerate -m p2g -q querysX/X_selprotT_mouse.fa -t subseq/subseq.selprotT_mouse.fa.CONTRA.Ichthyophthirius_multifiliis_strain_G5.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus musculus # Complete
        Target: gi|340503028|gb|GL984123.1|:subseq(32498,51531) Ichthyophthirius multifiliis unplaced genomic scaffold scaff_1120509251162, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 134
   Query range: 45 -> 174
  Target range: 9999 -> 10389

    46 : CysValSerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArg :    65
         |||:!!.!!   ..!|||!:! !!  !|||    !!!  !  !.!!.!|||..!..!!:!
         CysIleGly***SerTyrLysGlyAsnPheIle***LeuLysAsnAlaIleAspSerLys
 10000 : TGCATTGGGTGATCTTATAAAGGAAATTTTATTTAATTAAAAAATGCGATAGATTCAAAA : 10057

    66 : TyrProAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyrArgHisIle :    85
           !|||:!!:!!  !|||   |||  !.!.|||! ! !!   |||:!! !!!:!  !:!!
         ValProAsnValAspIleIleGlyThrGluTyrProAlaThrProLeuAsnGlnPheLeu
 10058 : GTTCCTAATGTAGATATTATTGGAACAGAGTACCCAGCCACCCCTTTAAATCAATTTTTA : 10117

    86 : AlaSerPheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGlyLysAsp :   105
         :!!!.!.!.:!!!:!|||.!. !!:!!! !  !|||  !||||||||| !!|||:!! ! 
         SerLysIleIleAsnValIle***IleGlyGlyIleThrLeuIleIlePheGlyGluLys
 10118 : TCAAAAATAATAAATGTTATATAAATTGGAGGAATTACATTAATTATTTTTGGAGAAAAA : 10177

   106 : ProPheAlaPhePheGlyMet<->GlnAlaProSerIleTrpGlnTrpGlyGlnGluAsn :   124
           !|||  !.!!.!.  !!!:   .!.  !|||..!! !!:: !      ! !! !!|||
         IlePhe***IleLeuLysIleAsnAsnLeuProAspThrTyrTyrLysIle******Asn
 10178 : ATATTTTAAATTCTAAAAATAAATAACTTGCCAGATACTTATTATAAAATTTAATAAAAT : 10237

   125 : LysValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMet :   144
         |||  !  !||| !!!!:.!.:!!||||||:!!.!!|||||||||......     !:!:
         LysTrpThrAlaGlyIlePheLeuPhePheValGlyAsnMetIleSerGlyAlaLeuLeu
 10238 : AAATGGACTGCGGGTATATTCTTATTTTTTGTAGGAAATATGATTAGTGGAGCTCTTTTA : 10297

   145 : SerThrGlyAlaPheGluIleThrLeuAsnAspValProValTrpSerLysLeuGluSer :   164
         ! !|||||||||||||||:!!! !! !||||||! !! !:!!!::||||||||| !!..!
         ***ThrGlyAlaPheGluValIleCysAsnAspGluLeuIlePheSerLysLeu***Gln
 10298 : TAAACAGGAGCTTTCGAAGTTATTTGTAATGATGAACTTATATTTTCAAAACTATAACAA : 10357

   165 : GlyHisLeuProSerMetGlnGlnLeuVal :   174
         |||...:!!|||!:!:!:.!.:!!:!!:!!
         GlyArgMetProAsnLeuAsnGluIleIle
 10358 : GGAAGAATGCCTAATTTAAATGAAATTATT : 10389

vulgar: SPP00000116_1.0 45 174 . gi|340503028|gb|GL984123.1|:subseq(32498,51531) 9999 10389 + 134 M 67 201 G 0 3 M 62 186
-- completed exonerate analysis
