TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: alaiba.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic cont...    38   0.001
gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic cont...    38   0.001
gi|325195394|emb|FR826189.1| Albugo laibachii Nc14, genomic cont...    30   0.25 
gi|325191170|emb|FR824381.1| Albugo laibachii Nc14, genomic cont...    29   0.72 
gi|325194513|emb|FR825335.1| Albugo laibachii Nc14, genomic cont...    28   1.2  
gi|325186739|emb|FR824163.1| Albugo laibachii Nc14, genomic cont...    27   2.1  
gi|325189459|emb|FR824260.1| Albugo laibachii Nc14, genomic cont...    27   3.6  
gi|325184173|emb|FR824099.1| Albugo laibachii Nc14, genomic cont...    26   4.6  
gi|325190673|emb|FR824324.1| Albugo laibachii Nc14, genomic cont...    26   6.1  
gi|325177034|emb|FR824154.1| Albugo laibachii Nc14, genomic cont...    25   7.9  
gi|325185656|emb|FR824132.1| Albugo laibachii Nc14, genomic cont...    25   7.9  

>gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic contig
             CONTIG_16_NC14_v4_210924_216
          Length = 210924

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 8     GGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI 50
             G   +   +E G Y+CA C   +++S++K+     WPAF + +
Sbjct: 89207 GSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSGCGWPAFYDAV 89335


>gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic contig
             CONTIG_430_NC14_v4_18487_112
          Length = 18487

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 8     GGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI 50
             G   +   +E G Y+CA C   +++S++K+     WPAF + +
Sbjct: 11449 GSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSGCGWPAFYDAV 11577


>gi|325195394|emb|FR826189.1| Albugo laibachii Nc14, genomic contig
           CONTIG_3304_NC14_v4_400_42
          Length = 400

 Score = 30.4 bits (67), Expect = 0.25
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 26  CGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEA 66
           C   ++S    +   +PW  F +  + +   +RPEH  +EA
Sbjct: 238 CALRVYSPVDSHTCQTPWSVFQDGSNGEPTGRRPEHADAEA 116


>gi|325191170|emb|FR824381.1| Albugo laibachii Nc14, genomic contig
             CONTIG_336_NC14_v4_27430_235
          Length = 27430

 Score = 28.9 bits (63), Expect = 0.72
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 26    CGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSE-ALKVSCGKCGN----GLGH 80
             CG    ++   + H+S    F ET+++ S+ +RP ++ S    K  C  C      G G 
Sbjct: 15980 CGSRQKNTEKHHPHASSS*TFVETLNS-SLFQRPMNSSSNLTQKTRCHDCAGLRTLGEGQ 16156

Query: 81    EFLNDGPKP 89
                 DGP P
Sbjct: 16157 HSYQDGPAP 16183


>gi|325194513|emb|FR825335.1| Albugo laibachii Nc14, genomic contig
           CONTIG_2098_NC14_v4_1105_110
          Length = 1105

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 20  VYVCAKCGYELFSSRSKYAHSSP---WPAFTETIHA 52
           V+ C  CG E FSS S +  SSP    P   + +HA
Sbjct: 716 VHNCPSCGSEAFSSGSFHCSSSPPLASPPLLQRVHA 609


>gi|325186739|emb|FR824163.1| Albugo laibachii Nc14, genomic contig
             CONTIG_118_NC14_v4_72792_237
          Length = 72792

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -2

Query: 26    CGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNR--SEALKVS 70
             CG  +   +S+      WP  T TI   S    P H R  S+AL +S
Sbjct: 45788 CG*SVVGKKSRGRQRHCWPTRTATIFLPSSCSSPSHLRAKSQALYIS 45648


>gi|325189459|emb|FR824260.1| Albugo laibachii Nc14, genomic contig
            CONTIG_215_NC14_v4_44622_273
          Length = 44622

 Score = 26.6 bits (57), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 35   SKYAHSSPWPAFTETIH--ADSVAKRPEH 61
            +KYAH++P PA T  IH  + S   R  H
Sbjct: 7801 AKYAHANPQPARTPMIH*SSSSYLNRSRH 7887


>gi|325184173|emb|FR824099.1| Albugo laibachii Nc14, genomic contig
             CONTIG_54_NC14_v4_109827_242
          Length = 109827

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 14    NHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFT 47
             +HF P V   A  GY    S  K AH    P FT
Sbjct: 60153 DHFSPSVRKSASRGYG*IESSEK*AHRVQVPTFT 60254


>gi|325190673|emb|FR824324.1| Albugo laibachii Nc14, genomic contig
             CONTIG_279_NC14_v4_33719_246
          Length = 33719

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 39    HSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCG 75
             H    P+ T  +H   + +   HN   +    CGKCG
Sbjct: 31529 HMPKRPSNTSPVHELILGRATTHNTLSSECAPCGKCG 31419


>gi|325177034|emb|FR824154.1| Albugo laibachii Nc14, genomic contig
             CONTIG_109_NC14_v4_76566_235
          Length = 76566

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 23/60 (38%), Positives = 25/60 (41%)
 Frame = -2

Query: 49    TIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGK 108
             T +  SVA  P   R EAL  S   C   L   FL+ G  P       F  S KFVP  K
Sbjct: 65537 TAYQKSVAVAPHQRREEALLCSRLHCSIPLLSAFLSGGFSP------TFPES-KFVPS*K 65379


>gi|325185656|emb|FR824132.1| Albugo laibachii Nc14, genomic contig
             CONTIG_87_NC14_v4_86971_235
          Length = 86971

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 58    RPEHNRSEALKVSCGKC 74
             RP+H  S AL+V+C  C
Sbjct: 54787 RPDHPNSRALEVTCNGC 54837


  Database: alaiba.fa
    Posted date:  Nov 22, 2011  5:53 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,600,940
Number of Sequences: 3816
Number of extensions: 91530
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of query: 116
length of database: 10,913,379
effective HSP length: 86
effective length of query: 30
effective length of database: 10,585,203
effective search space: 317556090
effective search space used: 317556090
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
