TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: laibachii.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325190797|emb|FR824333.1| Albugo laibachii Nc14, genomic cont...    30   1.4  
gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic cont...    29   1.8  
gi|325180840|emb|FR824055.1| Albugo laibachii Nc14, genomic cont...    28   4.1  
gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic cont...    28   4.1  
gi|325186298|emb|FR824149.1| Albugo laibachii Nc14, genomic cont...    28   5.3  
gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic cont...    27   6.9  
gi|325187966|emb|FR824202.1| Albugo laibachii Nc14, genomic cont...    27   6.9  
gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic cont...    27   9.0  

>gi|325190797|emb|FR824333.1| Albugo laibachii Nc14, genomic contig
             CONTIG_288_NC14_v4_32941_356
          Length = 32941

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -3

Query: 58    YMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSI 117
             Y   IS+ YP +      Y P+P       FLS + +     +++G  P    G  AP +
Sbjct: 31424 YSNRISREYPALLCTSSPYSPRP----GKPFLSSYDVEFETELMLGYHP-TRAGFDAPEV 31260

Query: 118   W--QWGQENKVYACMMVFFLSNMIENQCMS 145
             W  Q+G  N V+       LS +I  QC S
Sbjct: 31259 WQTQYGPINGVW------HLSAIINVQCAS 31188


>gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic contig
              CONTIG_32_NC14_v4_147300_209
          Length = 147300

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 46     CVSUGYRRVFEEYMRVISQRYPDI--RIEGENYLPQP 80
              C S G+ + + E  + +  RYP +  RI G+NY   P
Sbjct: 132448 CTSCGFAKNYMEVKKHLENRYPQLRDRIYGDNYAVHP 132338



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 123    ENKVYACMMVFFLSNMIENQCMSTGAFEITLN 154
              +N++ AC  V  L   I  + +S+GAFEI LN
Sbjct: 132114 DNRI-ACFTVLILVGTISQKLISSGAFEIYLN 132022


>gi|325180840|emb|FR824055.1| Albugo laibachii Nc14, genomic contig
             CONTIG_10_NC14_v4_229526_245
          Length = 229526

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 105   DPFAFFGMQAPSIWQWGQENKVYACMMVFF 134
             + F  + + +PS+W + +E+ + AC + FF
Sbjct: 54855 ESFQSYPISSPSMWMYRREDCIIACFLPFF 54944


>gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic contig
             CONTIG_72_NC14_v4_96858_243
          Length = 96858

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 44    QICVSUGYRRVFEEYMRVISQRYPDIRIEGENY-LPQPIYRHIASFLSVFKL 94
             QIC   G  R  EEY R   + +  IR++ ++Y L   +Y    ++  VFKL
Sbjct: 13924 QICAIHGDFRQAEEYWRTAEETF-HIRVDRQSYELLVQVYTQARAYDKVFKL 14076


>gi|325186298|emb|FR824149.1| Albugo laibachii Nc14, genomic contig
             CONTIG_104_NC14_v4_77927_239
          Length = 77927

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +2

Query: 6     LLLVAASAVVRSEASANLGGVPSKRLKMQYATGPL-----LKFQICVSUGYRRVF-EEYM 59
             L L  A  ++  +ASAN GGV S  L++  A            Q+  S G + VF EEY+
Sbjct: 47738 LRLEQAGVILFKDASANKGGVTSSSLEVLAALCMSDQEFEENMQVDASTGKKPVFYEEYV 47917

Query: 60    RVISQR 65
             + + +R
Sbjct: 47918 KEVQRR 47935


>gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic contig
             CONTIG_53_NC14_v4_112287_155
          Length = 112287

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 64    QRYPDIRIEGENYLPQPI-YRHIASFLSVFKLVLIGLIIVGKDPFAFF 110
             Q  P IR + +  L  P  ++HI S+ +   L+LIGL  +    F +F
Sbjct: 92172 QESPTIRSKSQKKLLYPTRFQHIQSYRAFASLLLIGLSFIPFHHFPYF 92315


>gi|325187966|emb|FR824202.1| Albugo laibachii Nc14, genomic contig
             CONTIG_157_NC14_v4_58374_239
          Length = 58374

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 69    IRIEGENYLPQPIYRHIASFLSVFKLV 95
             + I  E+YLP  ++  + SFL+ FKL+
Sbjct: 15599 LNIPHESYLPVDLHCRVLSFLAFFKLI 15519


>gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic contig
             CONTIG_82_NC14_v4_91335_233
          Length = 91335

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 96    LIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFF 134
             ++ LI++    + F      S+W W Q  KV+ C ++FF
Sbjct: 49691 ILSLILLSVQSWLF------SVW*WLQHLKVHLCFLLFF 49593


  Database: laibachii.fa
    Posted date:  Nov 22, 2011  6:35 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,259,203
Number of Sequences: 3816
Number of extensions: 97822
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 382
length of query: 195
length of database: 10,913,379
effective HSP length: 95
effective length of query: 100
effective length of database: 10,550,859
effective search space: 1055085900
effective search space used: 1055085900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
