TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: discoideumAX4.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    32   0.23 
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    28   3.3  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    27   9.7  

>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole
               genome shotgun sequence
          Length = 5125352

 Score = 32.3 bits (72), Expect = 0.23
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 55      FEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLI 100
               ++  MR+I + YP +R + +N L  PIY    +++  F L LI LI
Sbjct: 4151275 YQHLMRIIHRNYPLLRNKYQNELLMPIYHIC*TYI*FFHLYLIFLI 4151412



 Score = 31.2 bits (69), Expect = 0.51
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 130     MMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLN 184
               + +F LSN+IE    S   FE+  N    WSK+E  +     +L+ +LD E+ L+
Sbjct: 3822860 LRIFSLSNLIE----SVKLFELLSNKNFDWSKIEYTNEQLNSKLIFLLDQELSLS 3822708



 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 69     IRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFF 110
              I I  +NY  Q +Y +I +F+S+F  ++I + ++    F FF
Sbjct: 975243 IIIINKNY*TQSLYNNIFNFISIFPFIIIIIRLIFFFFFFFF 975368



 Score = 27.3 bits (59), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 96      LIGLIIVGKDPFAFFGMQAPSIWQWGQE 123
               +I L+ +G+ P  FFG Q   +  W Q+
Sbjct: 4048533 IIILLFLGEAPMGFFGFQEVQVVNWAQD 4048616


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3,
              whole genome shotgun sequence
          Length = 6357299

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = -2

Query: 136    SNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS 195
              SN   +   +T     T ND P+   +E    P  +     +D+ +K+N+      +HR+
Sbjct: 884011 SNNENSNIQTTATATATDNDTPIIQPIERPTEPYQENFTSDIDDLVKINIIQSETVYHRT 883832


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 107     FAFFGMQAPSIWQWGQENKVYACMMVFF 134
               F FFG Q   ++ +G + KV+  + +FF
Sbjct: 5369603 FFFFGFQTQKVFFFGFQTKVFFFLFIFF 5369520


  Database: discoideumAX4.fa
    Posted date:  Nov 22, 2011  6:08 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,417,721
Number of Sequences: 6
Number of extensions: 318746
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 273
length of query: 195
length of database: 11,314,357
effective HSP length: 95
effective length of query: 100
effective length of database: 11,313,787
effective search space: 1131378700
effective search space used: 1131378700
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
