TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: arara.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847921|gb|ADNL01002682.1| Astrammina rara contig03168, who...    23   4.0  
gi|330848275|gb|ADNL01002328.1| Astrammina rara contig02778, who...    23   5.2  
gi|330850512|gb|ADNL01000091.1| Astrammina rara contig00096, who...    23   5.2  
gi|330848728|gb|ADNL01001875.1| Astrammina rara contig02226, who...    22   8.9  

>gi|330847921|gb|ADNL01002682.1| Astrammina rara contig03168, whole
           genome shotgun sequence
          Length = 1339

 Score = 23.1 bits (48), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 115 PSIWQWGQE 123
           P IWQW QE
Sbjct: 292 PKIWQWSQE 318


>gi|330848275|gb|ADNL01002328.1| Astrammina rara contig02778, whole
           genome shotgun sequence
          Length = 317

 Score = 22.7 bits (47), Expect = 5.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 156 VPVWSKLESGHLPS 169
           VPVWS  ES H P+
Sbjct: 129 VPVWSFPESQHFPN 88


>gi|330850512|gb|ADNL01000091.1| Astrammina rara contig00096, whole
           genome shotgun sequence
          Length = 243

 Score = 22.7 bits (47), Expect = 5.2
 Identities = 8/42 (19%), Positives = 25/42 (59%)
 Frame = -2

Query: 68  DIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAF 109
           D+R++   ++   +Y H  S++  F ++ I  +++ +D +++
Sbjct: 206 DLRLQYNVFIYVCMYEHKVSYIFYF*IIKIKTLLIIRD*YSY 81


>gi|330848728|gb|ADNL01001875.1| Astrammina rara contig02226, whole
           genome shotgun sequence
          Length = 241

 Score = 21.9 bits (45), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 16  RSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVF 55
           RSE S  + G+ + +L    ++ P L   +CVS     VF
Sbjct: 194 RSERSRLMSGMTNDKLICTSSSLPTLNVFVCVSIYTFNVF 75


  Database: arara.fa
    Posted date:  Nov 22, 2011  6:49 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,169
Number of Sequences: 3231
Number of extensions: 3788
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 195
length of database: 483,365
effective HSP length: 70
effective length of query: 125
effective length of database: 257,195
effective search space: 32149375
effective search space used: 32149375
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)
