TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: sarctica.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.2994 of Sphaeroforma arctica JP610                          30   3.6  

>supercont1.2994 of Sphaeroforma arctica JP610
          Length = 4301

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 147  GAFEITLNDVPVWSKLESGHLP 168
            GAFE+ + D  +WSK ++G LP
Sbjct: 3233 GAFEVAMGDELLWSKKDTGQLP 3298


  Database: sarctica.fa
    Posted date:  Nov 22, 2011  6:22 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,869,352
Number of Sequences: 15618
Number of extensions: 417102
Number of successful extensions: 2202
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 1596
length of query: 195
length of database: 40,529,447
effective HSP length: 103
effective length of query: 92
effective length of database: 38,920,793
effective search space: 3580712956
effective search space used: 3580712956
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
