TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: ppolycephalum.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig25325  829 829                                                   31   3.8  
Contig8211  6300 9357                                                  30   6.5  
Contig3263  10972 16936                                                30   6.5  
Contig250  36875 59326                                                 30   8.5  
Contig162  39186 68424                                                 30   8.5  

>Contig25325  829 829
          Length = 829

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 113 QAPSIWQWGQE-NKVYACMMVFFLSNMIENQCMSTGAF 149
           QAP  + W +  NK+++C  VFFL  M  N C S   F
Sbjct: 543 QAPVQY*WEKNLNKIFSCRKVFFLPKMNINVCKSVKFF 430


>Contig8211  6300 9357
          Length = 9357

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
 Frame = -1

Query: 53   RVFEEYMRVISQRYPDIRIEGEN-YLPQPIYRHIA-SFLS--VFKLVL------IGLIIV 102
            R+F+ +  + S+   +   EG   Y  + ++ + A SFLS  +F+  L      + L+  
Sbjct: 3132 RIFDYHRFIRSRETHETSSEGCGVYRKRGVFFYAAISFLSTLIFRFYLFIYCEDLTLVRF 2953

Query: 103  GKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLS 136
              DP  +F ++  S+W+W +++++    +   LS
Sbjct: 2952 SSDPMRYFAIRLKSLWEWLKKHQILLLSLSLSLS 2851


>Contig3263  10972 16936
          Length = 16936

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = +2

Query: 44   QICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLS-VFKLVLIGLIIV 102
            ++C   G   + +  +  I Q Y  ++    ++ P P  R   S L+ ++ +V + +II+
Sbjct: 6314 EVCERCGKSYLRDYSVEHIGQHYTGLQTPTNSFQPPPPPRSTFSTLNCLYGIVPLSIIII 6493

Query: 103  GKDPFAFFGMQ-APSIWQ---WGQENKVYACMMVFFLSNMIENQCMSTGAFE 150
             +       +  AP++ Q   +   NK+++C  VFFL  M  N   +   F+
Sbjct: 6494 IQYLCTVAPLNIAPTLVQH*RYKNLNKIFSCRKVFFLPKMNLNVYKNVKIFQ 6649


>Contig250  36875 59326
          Length = 59326

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 42    KFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIAS 87
             K ++C+S G R  F        +R+P +     +Y P+ +  H AS
Sbjct: 49330 KMRVCLSKGSRSAFSLVSLAPERRFPSVAPAHLSYAPRTVVAHAAS 49193


>Contig162  39186 68424
          Length = 68424

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 76    YLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPS 116
             Y  Q +  H A   S+FK+   G + +  DPF F+GM  PS
Sbjct: 33792 YNQQVLLSHYALSPSLFKIG--GFLWISIDPFGFYGMTIPS 33676


  Database: ppolycephalum.fa
    Posted date:  Nov 22, 2011  6:51 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,753,948
Number of Sequences: 297657
Number of extensions: 1397978
Number of successful extensions: 5317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5316
length of query: 195
length of database: 106,339,350
effective HSP length: 108
effective length of query: 87
effective length of database: 74,192,394
effective search space: 6454738278
effective search space used: 6454738278
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
