TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: dfasciculatum.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    31   0.62 
gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    28   5.2  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    28   5.2  
gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ...    27   8.9  

>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun
              sequence
          Length = 3408800

 Score = 30.8 bits (68), Expect = 0.62
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +2

Query: 84     HIASFLSVFKLVLIGLIIVGKDPF-AFFGMQAPSIWQWG--QENKVYACMMVFFLSNMIE 140
              ++  FLS+FKL+L+ +     D F +F+ M++  + +W   Q+  + + +   FL +MI 
Sbjct: 538124 YLLLFLSMFKLILLLM-----DGFKSFYQMKSMHLIKWRDIQQYLIQSTIR*LFLEDMIT 538288

Query: 141    NQCMST 146
                CM+T
Sbjct: 538289 RMCMAT 538306


>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 122    QENKVYACMMVFFLSNMIEN 141
              ++NK+  C+ VFFLSNM  N
Sbjct: 698478 KKNKLEICLFVFFLSNMFIN 698419


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 100     IIVGKDPFAFF-GMQAPSIWQWGQENKVYACMMVFF 134
               I++G     FF G+Q    W W Q  K +  +MVFF
Sbjct: 3712862 IVIGNQNIRFFIGLQTLQRWHW-QRQKSFVGIMVFF 3712758


>gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence
          Length = 3468650

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 149     FEITLNDVPVWSKLESGHLPSMQQLV 174
               ++ITLN   + + L+SGH+ S+Q L+
Sbjct: 2600528 YKITLNHDDIIAILQSGHISSLQYLI 2600605


  Database: dfasciculatum.fa
    Posted date:  Nov 22, 2011  6:17 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,633,107
Number of Sequences: 25
Number of extensions: 156692
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 165
length of query: 195
length of database: 10,339,736
effective HSP length: 94
effective length of query: 101
effective length of database: 10,337,386
effective search space: 1044075986
effective search space used: 1044075986
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
