TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: pcapsici.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_12                                                       28   6.0  
PHYCAscaffold_22                                                       28   7.8  
PHYCAscaffold_6                                                        28   7.8  

>PHYCAscaffold_12
          Length = 1145657

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 8      LVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVIS 63
              LVAA A+V S A++ +   PS  +    ++ PLL    CV    + V   Y    S
Sbjct: 988711 LVAAVAVVFSAAASTVSSSPSGSMSATGSSPPLLSSPTCVCSSNKPVSNAYATTAS 988544


>PHYCAscaffold_22
          Length = 843021

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 130    MMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGH 166
              MM FFLS ++          E+T N VP W+K  SGH
Sbjct: 408282 MMAFFLSTVLP--------VEVTFNYVPTWTK--SGH 408362


>PHYCAscaffold_6
          Length = 1423605

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 76     YLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFF 110
              Y   P Y     +LS+F  VL GLI V  D +A +
Sbjct: 573104 YWRTPSYSLTRMYLSIFLAVLFGLIFVTNDDYASY 573208


  Database: pcapsici.fa
    Posted date:  Nov 22, 2011  6:34 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,316,937
Number of Sequences: 917
Number of extensions: 192037
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 430
length of query: 195
length of database: 21,341,249
effective HSP length: 99
effective length of query: 96
effective length of database: 21,250,466
effective search space: 2040044736
effective search space used: 2040044736
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
