TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: gniphandrodes.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266...    27   3.3  

>gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669,
             whole genome shotgun sequence
          Length = 19534

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 109   FFGMQAPSIWQWGQENKVYACM 130
             FF   A +I+ WG++N+ Y C+
Sbjct: 13674 FFRKSAAAIFYWGEDNRGYICV 13609


  Database: gniphandrodes.fa
    Posted date:  Nov 22, 2011  6:27 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,569,384
Number of Sequences: 3680
Number of extensions: 47826
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of query: 195
length of database: 5,120,956
effective HSP length: 89
effective length of query: 106
effective length of database: 4,793,436
effective search space: 508104216
effective search space used: 508104216
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
