Command line: [exonerate -m p2g --showtargetgff -q eEFSec.fa -t eEFSec_Sparasitica_fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|288565299|gb|GG743898.1|:subseq(239874,11000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.16, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 539
   Query range: 86 -> 361
  Target range: 6319 -> 5466

   87 : GlnValThrLeuValAspCysProGlyHisAlaSerLeuIleArgThrIleIleGlyGlyAl :  107
        |||:!!||||||||||||||||||||||||||||||||||||!:!|||:!!|||||||||||
        GlnLeuThrLeuValAspCysProGlyHisAlaSerLeuIleLysThrValIleGlyGlyAl
 6319 : CAGCTCACGCTGGTCGACTGCCCGGGCCACGCGTCGCTCATCAAAACGGTCATTGGCGGCGC : 6259

  108 : aGlnIleIleAspLeuMetMetLeuValIleAspValThrLysGlyMetGlnThrGlnSerA :  128
        |!!.|||||||||:!!  !:!:||||||||||||!.!..!||||||!!:|||! !|||!!! 
        aHisIleIleAspMetAlaLeuLeuValIleAspAlaValLysGlyIleGlnMetGlnThrI
 6258 : CCACATCATCGACATGGCGCTTCTCGTCATCGACGCCGTGAAGGGCATTCAGATGCAGACGA : 6196

  129 : laGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeuValValValLeuAsnLysIle :  148
         !|||!    !|||:!:!.!:!!||||||   ..! ! :!!:!!|||||||||||||||:!!
        leGluSerThrValLeuAlaGluIleAlaThrSerHisValIleValValLeuAsnLysVal
 6195 : TCGAGTCGACCGTGCTGGCCGAGATTGCAACGTCGCATGTGATTGTCGTGCTCAACAAGGTC : 6136

  149 : AspLeuLeuProGluGlyLysArgGlnAlaAlaIleAspLysMetThrLysLysMetGlnLy :  169
        ||||||||| !!!!:  !  !! !|||  ! !!        !   |||!  :::!       
        AspLeuLeuThrAspLysAlaThrGlnLeuProAlaMetLeuAlaThrIleArgThrPheLe
 6135 : GACCTGCTCACGGACAAGGCGACGCAGCTGCCCGCGATGCTGGCCACGATCCGCACCTTCTT : 6073

  170 : sThrLeuGluAsnThrLysPheArgGlyAlaProIleIleProValAlaAlaLysProGlyG :  190
        !:!!! !..!   |||   .!.!:!! !..!||||||:!:||||||||||||          
        uSerSerSerProThr---LeuGlnAspCysProIleValProValAlaAla----------
 6072 : GTCGTCGTCGCCAACG---CTGCAAGACTGCCCGATTGTGCCTGTGGCTGCC---------- : 6022

  191 : lyProGluAlaProGluThrGluAlaProGlnGlyIleProGluLeuIleGluLeuLeuThr :  210
            !!!:|||  !!  .!!...||||||||||||!!:|||!!:|||:!!! !  !:!!  !
        --GlyAspAlaAspGlyAlaArgAlaProGlnGlyMetProAspLeuLeuAlaThrMetGln
 6021 : --GGCGATGCCGACGGCGCCCGCGCGCCGCAGGGCATGCCGGACCTCCTCGCGACGATGCAA : 5965

  211 : SerGlnIleSerIleProThrArgAspProSerGlyProPheLeuMetSerValAspHisCy :  231
         !!!!.:!:  !:!:|||||||||...  !..!||||||.!!! !   :!!:!!||||||||
        ArgHisLeuHisLeuProThrArgSerGlyAspGlyProLeuCysTyrAlaIleAspHisCy
 5964 : CGCCACCTGCACCTGCCGACGCGTTCGGGTGACGGCCCGCTCTGCTACGCCATCGACCACTG : 5902

  232 : sPheSerIleLysGlyGlnGlyThrValMetThrGlyThr{I}  >>>> Target Intro :  245
        |||| !!:!:::!|||:!!|||||||||:!:|||||||||{:}            43 bp  
        sPheProLeuArgGlyLysGlyThrValLeuThrGlyThr{V}++                 
 5901 : CTTTCCGCTGCGGGGCAAAGGCACCGTGCTCACTGGCACT{G}gt................. : 5857

  246 : n 1 >>>>  {le}LeuSerGlySerIleSerLeuGlyAspSerValGluIleProAlaLeu :  261
                  {!!}|||||||||!!!:!! !!:!!..!|||!!!:!!! !||||||  !|||
                ++{al}LeuSerGlyThrValArgValAsnAspThrIleAlaIleProIleLeu
 5856 : ........ag{TC}TTATCGGGCACGGTCCGAGTCAACGATACGATCGCGATCCCGATTCTC : 5769

  262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaMetGl :  282
           ..!! !|||||||||||||||:!:||||||||||||! !  !:!!  !!.!|||!!:||
        GlyThrGluLysLysValLysSerLeuGlnMetPheHisThrSerValGluLysAlaIleGl
 5768 : GGCACCGAAAAGAAGGTCAAGTCGCTCCAGATGTTCCACACGAGCGTCGAGAAGGCCATCCA : 5706

  283 : nGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluArgGlyLeuV :  303
        ||||||||||:!!|||:!! ! :!!  !   .!!||| !!  !  !|||||||||||||||!
        nGlyAspArgValGlyLeuArgLeuHisGlyLeuAspAlaAlaThrLeuGluArgGlyLeuA
 5705 : AGGCGACCGCGTCGGCCTCCGGCTGCACGGCCTCGATGCCGCGACCCTCGAGCGCGGCCTCG : 5643

  304 : alCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerValGluLysIlePro :  323
        .!  !.!!|||:!!||||||  !  !|||! !  !  !:!!:!!..!|||.!.::::!!! !
        laIleThrProLysSerLeuSerPheValLeuAsnLeuValLeuGlnValHisArgValArg
 5642 : CTATCACGCCCAAGTCGCTCAGCTTTGTCCTCAACCTCGTGCTACAAGTGCATCGCGTACGT : 5583

  324 : TyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrValGlyHisGluThrVa :  344
        !:!||| !!  !  !! !:!!!:!   |||||| ! |||:!:||||||||||||...|||||
        PhePheGlyLeuAspCysGluSerGlyAlaLysValHisValThrValGlyHisSerThrVa
 5582 : TTCTTTGGCCTCGACTGCGAGAGCGGTGCCAAGGTGCACGTGACCGTCGGGCACAGCACCGT : 5520

  345 : lMetGlyArgLeuMetPhePheSerProAlaProAspAsnPheAspGlnGlu :  361
        |:!!!.!!:!  !!  ||||||  !  !:!!! !! !!:!|||!     |||
        lLeuAlaLysAlaThrPhePheHisGlySerHisAlaSerPheAlaValGlu
 5519 : GCTGGCCAAAGCCACCTTCTTCCACGGGTCGCACGCCAGCTTTGCGGTCGAG : 5467

vulgar: SPP00000038_1.0 86 361 . gi|288565299|gb|GG743898.1|:subseq(239874,11000) 6319 5466 - 539 M 88 264 G 1 0 M 11 33 G 4 0 M 54 162 S 0 1 5 0 2 I 0 39 3 0 2 S 1 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	gene	5467	6319	539	-	.	gene_id 1 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	5860	6319	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	5860	6319	.	-	.	insertions 0 ; deletions 5
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice5	5858	5859	.	-	.	intron_id 1 ; splice_site "GT"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	intron	5817	5859	.	-	.	intron_id 1
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice3	5817	5818	.	-	.	intron_id 0 ; splice_site "AG"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	5467	5816	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	5467	5816	.	-	.	insertions 0 ; deletions 0
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	similarity	5467	6319	539	-	.	alignment_id 1 ; Query SPP00000038_1.0 ; Align 6320 87 264 ; Align 6056 176 33 ; Align 6023 191 162 ; Align 5815 246 348
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|288565299|gb|GG743898.1|:subseq(239874,11000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.16, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 159
   Query range: 5 -> 62
  Target range: 6614 -> 6343

    6 : ValAsnValAsnValGlyValLeuGlyHisIle{A}  >>>> Target Intron 1 >>> :   17
        ||||||||||||||||||:!!|||||||||:!:{|}            50 bp         
        ValAsnValAsnValGlyIleLeuGlyHisVal{A}++                        
 6614 : GTCAACGTCAACGTCGGGATCTTGGGCCATGTG{G}gt........................ : 6578

   18 : >  {sp}SerGlyLysThrAlaLeuAlaArgAlaLeuSerThrThrAlaSerThrAlaAlaP :   36
           {||}||||||||||||::!|||!.!|||:!!|||||||||  !  !||||||||||||.
         ++{sp}SerGlyLysThrSerLeuValArgSerLeuSerThrHisLeuSerThrAlaAlaL
 6577 : .ag{AC}AGCGGGAAGACGAGCCTCGTCCGCTCTCTGAGCACGCACCTCTCGACGGCCGCGC : 6474

   37 : heAspLysGlnProGlnSerArgGluArg{G}  >>>> Target Intron 2 >>>>  { :   46
        !!||||||.!.|||||||||!:!!  |||{|}            50 bp            {
        euAspLysAsnProGlnSerLysAlaArg{G}++                         ++{
 6473 : TCGACAAGAACCCGCAGAGCAAGGCCCGC{G}gt.........................ag{ : 6393

   47 : ly}IleThrLeuAspLeuGlyPheSerCysPheSerValProLeuProAla :   62
        ||}||||||||||||||||||||||||!  .!...!:!!|||!!! !!|||
        ly}IleThrLeuAspLeuGlyPheSerSerLeuGlnLeuProPheThrAla
 6392 : GC}ATCACGCTGGACCTCGGCTTCTCGTCGCTGCAGCTACCCTTCACAGCG : 6344

vulgar: SPP00000038_1.0 5 62 . gi|288565299|gb|GG743898.1|:subseq(239874,11000) 6614 6343 - 159 M 11 33 S 0 1 5 0 2 I 0 46 3 0 2 S 1 2 M 28 84 S 0 1 5 0 2 I 0 46 3 0 2 S 1 2 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	gene	6344	6614	159	-	.	gene_id 2 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	6581	6614	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	6581	6614	.	-	.	insertions 0 ; deletions 0
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice5	6579	6580	.	-	.	intron_id 1 ; splice_site "GT"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	intron	6531	6580	.	-	.	intron_id 1
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice3	6531	6532	.	-	.	intron_id 0 ; splice_site "AG"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	6444	6530	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	6444	6530	.	-	.	insertions 0 ; deletions 0
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice5	6442	6443	.	-	.	intron_id 2 ; splice_site "GT"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	intron	6394	6443	.	-	.	intron_id 2
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	splice3	6394	6395	.	-	.	intron_id 1 ; splice_site "AG"
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	6344	6393	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	6344	6393	.	-	.	insertions 0 ; deletions 0
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	similarity	6344	6614	159	-	.	alignment_id 2 ; Query SPP00000038_1.0 ; Align 6615 6 33 ; Align 6529 18 84 ; Align 6392 47 48
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|288565299|gb|GG743898.1|:subseq(239874,11000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.16, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 135
   Query range: 463 -> 544
  Target range: 5218 -> 4972

  464 : LeuProArgLeuLysValTyrLysLeuLysHisLysHisGlyLeuValGluArgAlaMetAs :  484
        ||| !!!:!||| ! :!!  !|||:!!|||.!.:::|||||||||||||||!:!..!   !!
        LeuSerLysLeuHisIleGlyLysIleLysGluArgHisGlyLeuValGluLysCysGlyGl
 5218 : TTGTCCAAGCTGCACATCGGCAAAATCAAGGAGCGCCATGGTCTCGTCGAAAAGTGCGGCGA : 5158

  485 : pAspTyrSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPheValG :  505
        : !!  !  !!.!|||! !!:!..!||||||::!||||||||||||:!!.!.:!!|||  !|
        uHisGlyValAlaIleValLysAspLeuPheArgLysGluThrAsnLeuAspIlePheLysG
 5157 : GCACGGCGTTGCGATCGTCAAGGATCTCTTTCGAAAAGAGACCAACCTCGACATCTTCAAGG : 5095

  506 : lyLeuLysValHisLeuSerThrGlyGlu<->LeuGlyIleIleAspSerAlaPheGlyGln :  524
        |||||!  |||!!.  !..!  !..!...   ||||||  !||||||.!!|||||||||:!!
        lyLeuThrValGlnAsnGluArgSerArgAlaLeuGlyAlaIleAspGlyAlaPheGlyLys
 5094 : GTCTAACCGTGCAGAACGAGCGGTCGCGCGCCCTCGGCGCCATCGACGGCGCGTTTGGCAAG : 5035

  525 : SerGlyLysPheLysIleHisIleProGlyGlyLeuSerProGluSerLysLysIleLeu :  544
        !!!||||||! !::!:!!!!..!! !!! !|||  !!!!! !  !.!! ! ::!:!!:!!
        ThrGlyLysCysArgValGlnPheThrAspGlySerThrGlnProGlyAspArgLeuVal
 5034 : ACGGGCAAGTGCCGGGTTCAGTTTACGGACGGAAGCACGCAGCCAGGCGACCGACTCGTG : 4973

vulgar: SPP00000038_1.0 463 544 . gi|288565299|gb|GG743898.1|:subseq(239874,11000) 5218 4972 - 135 M 51 153 G 0 3 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	gene	4973	5218	135	-	.	gene_id 3 ; sequence SPP00000038_1.0 ; gene_orientation .
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	cds	4973	5218	.	-	.	
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	exon	4973	5218	.	-	.	insertions 3 ; deletions 0
gi|288565299|gb|GG743898.1|:subseq(239874,11000)	exonerate:protein2genome:local	similarity	4973	5218	135	-	.	alignment_id 3 ; Query SPP00000038_1.0 ; Align 5219 464 153 ; Align 5063 515 90
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
