Command line: [exonerate -m p2g --showtargetgff -q eEFSec.fa -t eEFSec_Ptricornutum_fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|217411035|gb|CM000605.1|:subseq(945720,15000) Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 616
   Query range: 80 -> 351
  Target range: 5188 -> 6031

   81 : ProGlyGluProLeuLeuGlnValThrLeuValAspCysProGlyHisAlaSerLeuIleAr :  101
        |||! !:!!  !  !||||||:!!||||||||||||||||||||||||||||||||||||||
        ProAspLysLysAsnLeuGlnIleThrLeuValAspCysProGlyHisAlaSerLeuIleAr
 5189 : CCGGATAAGAAAAATCTGCAAATCACTTTGGTCGATTGTCCTGGCCACGCCAGTCTGATTCG : 5249

  102 : gThrIleIleGlyGlyAlaGlnIleIleAspLeuMetMetLeuValIleAspValThrLysG :  122
        |||||||||||||||||||||||||||||||:!!:!::!:||||||:!!|||!.!..!||||
        gThrIleIleGlyGlyAlaGlnIleIleAspMetValLeuLeuValValAspAlaValLysG
 5250 : AACCATAATCGGTGGCGCCCAAATCATTGATATGGTCTTACTAGTAGTTGACGCGGTGAAAG : 5312

  123 : lyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeuVal :  142
        ||  !|||.!!|||!!!.!!||||||||||||:!:!.!:!!:!:.!!! !! ! ! ||||||
        lyTrpGlnAlaGlnThrThrGluCysLeuValLeuAlaGluLeuThrSerProTyrLeuVal
 5313 : GGTGGCAGGCGCAAACAACGGAGTGCCTGGTCTTGGCCGAATTGACATCTCCGTATCTTGTT : 5372

  143 : ValValLeuAsnLysIleAspLeuLeuProGluGlyLysArgGlnAlaAlaIleAspLysMe :  163
        |||!.!|||||||||   |||! !!!!|||  !  !:!!|||.!.  !  !:!!!!::!!  
        ValAlaLeuAsnLysAlaAspGlnPheProProProGluArgAspGlnLeuLeuGluGlnAl
 5373 : GTGGCGCTAAACAAAGCGGATCAGTTTCCTCCGCCGGAACGAGACCAGCTACTCGAACAGGC : 5435

  164 : tThrLysLysMetGlnLysThrLeuGluAsnThrLysPheArgGlyAlaProIleIleProV :  184
         .!!   |||!!:!:! !   !|||:!!   |||::!|||  !..!|||||||||:!!  !|
        aAlaAlaLysIleArgAspArgLeuLysAlaThrArgPheAlaAsnAlaProIleValGlyV
 5436 : CGCGGCCAAAATTCGAGATCGTTTGAAAGCGACTCGGTTCGCGAATGCTCCTATTGTTGGTG : 5498

  185 : alAlaAlaLysProGlyGlyProGluAlaProGluThrGluAlaProGlnGlyIleProGlu :  204
        ||||||||     !||||||  !:!!!.! !!! !.!!...! !  !..!..!! !! !|||
        alAlaAlaCysValGlyGlyGluLysValAlaAlaAlaSerGluAspMetSerLysLeuGlu
 5499 : TAGCTGCCTGCGTTGGAGGGGAAAAGGTAGCCGCAGCAAGCGAAGACATGTCAAAACTCGAA : 5558

  205 : LeuIleGlu  >>>> Target Intron 1 >>>>  LeuLeuThrSerGlnIleSerIle :  215
        :!!   .!.            30 bp              !|||  !..!:!!:!! !!   
        ValArgAsn+-                         +-ThrLeuGlnAspLysLeuProPro
 5559 : GTTCGGAATga.........................aaACCCTGCAAGACAAACTACCGCCG : 5621

  216 : ProThrArgAspProSerGlyProPheLeuMetSerValAspHisCysPheSerIleLysGl :  236
        |||! !|||   |||..!||| !!|||! !.!.||||||||||||||||||||||||:::||
        ProLysArgThrProGluGlySerPheTyrPheSerValAspHisCysPheSerIleArgGl
 5622 : CCGAAGCGGACGCCCGAGGGCTCGTTCTACTTCAGCGTGGACCACTGTTTCTCTATTCGCGG : 5684

  237 : yGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIleSerLeuGlyAspSerValG :  257
        |!:!|||||||||:!:|||||||||:!!|||!:!|||:!!  !|||:!!..!|||  !:!!|
        yArgGlyThrValLeuThrGlyThrValLeuAsnGlyAlaAlaSerValAsnAspValLeuG
 5685 : ACGAGGAACTGTGCTAACTGGAACCGTTCTTAATGGTGCAGCTTCGGTAAATGATGTGCTCG : 5747

  258 : luIleProAlaLeuLysValValLysLysValLysSerMetGlnMetPheHisMetProIle :  277
        ||.!!|||.!!|||   :!!! !:::|||:!!||||||!!:||||||||| !    ! !:!!
        luPheProThrLeuGlyLeuAspArgLysIleLysSerIleGlnMetPheLysArgGlnVal
 5748 : AGTTTCCAACGCTGGGTTTGGATCGTAAGATCAAAAGCATACAAATGTTCAAACGACAGGTA : 5807

  278 : ThrSerAlaMetGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLe :  298
          ! !!  !...||||||||||||  !|||:!!||||||!:!.!.!!.||| !!||||||||
        GlnArgIleGlnGlnGlyAspArgAlaGlyValCysValSerAsnLeuAspAlaLysLeuLe
 5808 : CAACGGATTCAACAAGGGGATCGTGCAGGTGTTTGTGTTAGCAACTTAGACGCGAAGCTGTT : 5870

  299 : uGluArgGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerV :  319
        ||||||||||:!!!.!..!.!!|||! !:!!:!!!!.  !:!! ! !.!|||:!!     !|
        uGluArgGlyIleAlaAlaThrProGlyAlaValGlnLeuLeuLysGlyAlaIleAlaLeuV
 5871 : AGAGCGCGGTATTGCGGCTACGCCAGGGGCGGTGCAGTTGCTCAAAGGTGCGATTGCGCTAG : 5933

  320 : alGluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrVal :  339
        ||...|||:!!||||||!:!  !||| !!|||!!.!:!   ::!||||||||||||:!!|||
        alArgLysValProTyrTyrValGlyThrLeuHisSerGlySerLysPheHisIleSerVal
 5934 : TTCGCAAGGTACCGTATTATGTCGGTACTTTGCACAGCGGTAGTAAGTTTCATATCTCTGTT : 5993

  340 : GlyHisGluThrValMetGlyArgLeuMetPhePhe :  351
        ||||||   |||:!!|||!.!! !:!!!  |||!::
        GlyHisThrThrIleMetAlaThrValThrPheTrp
 5994 : GGGCATACCACTATCATGGCAACGGTGACCTTTTGG : 6031

vulgar: SPP00000038_1.0 80 351 . gi|217411035|gb|CM000605.1|:subseq(945720,15000) 5188 6031 + 616 M 127 381 5 0 2 I 0 26 3 0 2 M 144 432
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	gene	5189	6031	616	+	.	gene_id 1 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	cds	5189	5569	.	+	.	
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	exon	5189	5569	.	+	.	insertions 0 ; deletions 0
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	splice5	5570	5571	.	+	.	intron_id 1 ; splice_site "GA"
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	intron	5570	5599	.	+	.	intron_id 1
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	splice3	5598	5599	.	+	.	intron_id 0 ; splice_site "AA"
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	cds	5600	6031	.	+	.	
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	exon	5600	6031	.	+	.	insertions 0 ; deletions 0
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	similarity	5189	6031	616	+	.	alignment_id 1 ; Query SPP00000038_1.0 ; Align 5189 81 381 ; Align 5600 208 432
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|217411035|gb|CM000605.1|:subseq(945720,15000) Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 228
   Query range: 5 -> 70
  Target range: 4999 -> 5194

    6 : ValAsnValAsnValGlyValLeuGlyHisIleAspSerGlyLysThrAlaLeuAlaArgAl :   26
        :!!|||||||||:!!|||||||||||||||:!!|||||||||||||||:!!|||!.!!:!||
        LeuAsnValAsnLeuGlyValLeuGlyHisValAspSerGlyLysThrSerLeuValLysAl
 5000 : CTGAACGTCAACTTGGGTGTGCTGGGGCACGTCGACTCAGGCAAGACGTCGCTGGTCAAAGC : 5060

   27 : aLeuSerThrThrAlaSerThrAlaAlaPheAspLysGlnProGlnSerArgGluArgGlyI :   47
        ||||||||||  !  !||||||||||||.!!||||||..!  !|||||||||:!!||||||!
        aLeuSerThrLeuLeuSerThrAlaAlaLeuAspLysSerLysGlnSerArgGlnArgGlyM
 5061 : TCTGTCGACGTTGCTCTCGACTGCTGCGCTCGATAAGTCGAAACAATCACGTCAGCGTGGTA : 5123

   48 : leThrLeuAspLeuGlyPheSerCysPheSerValProLeuProAlaArgLeuArgSerSer :   67
        !:|||||||||||||||||||||||||||! !:!!  !:!!|||:!!!.!|||!:!:!!|||
        etThrLeuAspLeuGlyPheSerCysPhePheLeuAspMetProSerHisLeuGlnAlaSer
 5124 : TGACGCTCGATTTGGGATTTTCTTGTTTCTTTTTGGACATGCCCTCGCATTTACAAGCTTCC : 5183

   68 : LeuProGlu :   70
        ! !|||!!:
        TyrProAsp
 5184 : TACCCGGAT : 5194

vulgar: SPP00000038_1.0 5 70 . gi|217411035|gb|CM000605.1|:subseq(945720,15000) 4999 5194 + 228 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	gene	5000	5194	228	+	.	gene_id 2 ; sequence SPP00000038_1.0 ; gene_orientation .
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	cds	5000	5194	.	+	.	
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	exon	5000	5194	.	+	.	insertions 0 ; deletions 0
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	similarity	5000	5194	228	+	.	alignment_id 2 ; Query SPP00000038_1.0 ; Align 5000 6 195
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|217411035|gb|CM000605.1|:subseq(945720,15000) Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 181
   Query range: 399 -> 552
  Target range: 6217 -> 6709

  400 : GlnAlaThrGluGlyHisCysProArgGlnGlnTrpAlaLeuValGluPheGluLysProVa :  420
        :!!:!!  !!!:|||!!.     !! !!  !!.|||||||||:!!!!:|||:!!!  |||||
        GluSerLeuAspGlyGlnGluSerLeuLeuHisTrpAlaLeuLeuAspPheGlnIleProVa
 6218 : GAATCACTGGATGGGCAGGAGAGTCTACTTCATTGGGCGCTTCTTGATTTCCAAATCCCCGT : 6278

  421 : lThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAlaAspIleHisThrAsnT :  441
        |  !||||||! !  ! !!||||||||||||||||||||||||.!!!    !:!!:!!!.. 
        lHisCysProMetAspSerLeuValIleGlySerArgLeuAspThrValAspAsnSerThrG
 6279 : ACATTGTCCAATGGATAGCTTAGTGATCGGATCGCGCTTGGACACGGTGGATAATTCCACGG : 6341

  442 : hrCysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuGluAspArgAsnTyrAlaAsp :  461
         !! !  !  !|||! !!..  !   !!!! !  ! !!|||  !.!.!!!  ! !! !!!  
        lySerAlaSerAlaCysArgLeuAlaPheSerGlyArgLeuMetGlnSerValAspProGly
 6342 : GGTCCGCCAGTGCTTGCCGGCTAGCGTTTTCCGGTCGTCTCATGCAAAGCGTCGATCCAGGG : 6401

  462 : SerPheLeuProArgLeuLysValTyrLysLeuLysHisLysHisGlyLeuValGluArgAl :  482
        !.!  !:!! !!!:!|||::!:!!|||!  ! !|||.!.:::!..|||  !:!!..!|||  
        LysAspIleSerLysLeuArgLeuTyrThrProLysGluArgArgGlyThrIleSerArgLe
 6402 : AAAGACATTTCTAAATTGCGACTATATACTCCCAAAGAACGCCGAGGCACAATATCACGTCT : 6464

  483 : aMetAspAspTyr{Se}  >>>> Target Intron 1 >>>>  {r}ValIleGlyArgS :  492
        !   |||  !:!!{!.}            33 bp            {!}|||.!!|||  !.
        uGlyAspProHis{Ly}+-                         --{s}ValPheGlySerA
 6465 : CGGTGACCCCCAT{AA}gc.........................ga{A}GTCTTTGGATCTG : 6527

  493 : erLeuPheLysLysGluThrAsnIleGlnLeuPheValGlyLeuLysValHisLeuSerThr :  512
        .!|||||||||||||||||||||!!::!!  !||| !!|||:!!||||||!!.  !..!  !
        spLeuPheLysLysGluThrAsnMetLysAlaPhePheGlyMetLysValGlnThrGluArg
 6528 : ATCTGTTTAAGAAAGAAACCAACATGAAAGCTTTTTTTGGTATGAAAGTGCAGACGGAACGG : 6587

  513 : GlyGluLeuGlyIleIleAspSerAlaPheGlyGlnSerGlyLysPheLysIleHisIlePr :  533
        ..!|||:!!|||   ||| ! |||:!!||||||  !|||||||||!:!::!:!!  !.!!||
        AsnGluIleGlyGluIleLysSerSerPheGlyThrSerGlyLysTyrArgValPhePhePr
 6588 : AATGAGATTGGTGAGATCAAATCCTCGTTCGGAACGTCCGGCAAGTACCGAGTCTTCTTTCC : 6650

  534 : oGlyGlyLeuSerProGluSerLysLysIleLeuThrProAlaLeuLysLysArgAla :  552
        |!.!|||  !..! !!:!!..!   :!!   |||! !! !  !!!!|||:::  !|||
        oAlaGlyThrGluAlaLysGluGlyGluProLeuIleLeuArgPheLysArgPheAla
 6651 : TGCCGGTACAGAAGCGAAAGAAGGTGAGCCGTTGATCCTCCGCTTCAAACGTTTTGCC : 6709

vulgar: SPP00000038_1.0 399 552 . gi|217411035|gb|CM000605.1|:subseq(945720,15000) 6217 6709 + 181 M 87 261 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	gene	6218	6709	181	+	.	gene_id 3 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	cds	6218	6480	.	+	.	
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	exon	6218	6480	.	+	.	insertions 0 ; deletions 0
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	splice5	6481	6482	.	+	.	intron_id 1 ; splice_site "GC"
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	intron	6481	6513	.	+	.	intron_id 1
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	splice3	6512	6513	.	+	.	intron_id 0 ; splice_site "GA"
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	cds	6514	6709	.	+	.	
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	exon	6514	6709	.	+	.	insertions 0 ; deletions 0
gi|217411035|gb|CM000605.1|:subseq(945720,15000)	exonerate:protein2genome:local	similarity	6218	6709	181	+	.	alignment_id 3 ; Query SPP00000038_1.0 ; Align 6218 400 261 ; Align 6515 488 195
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
