Command line: [exonerate -E -m p2g --showtargetgff -q eEFSec_homosapiens.fa -t eEFSec_Homosapiens_Cparvum_fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: eEFSec;SPP00000038 Homo_sapiens #QUERY
        Target: gi|126212623|gb|CM000434.1|:subseq(923938,10755) Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 114
   Query range: 215 -> 305
  Target range: 4514 -> 4244

  216 : ProThrArgAspProSerGlyProPheLeuMetSerValAspHisCysPheSerIleLysGl :  236
        |||! !|||    !!..!  !|||.!!! !:!: !!:!!.!. !!  !!:!!.!|||   ||
        ProLysArgProThrAspLysProLeuArgLeuProLeuGlnAspValTyrLysIleGlyGl
 4514 : CCAAAGAGACCAACTGACAAGCCACTCCGTCTCCCATTACAAGATGTTTACAAGATAGGTGG : 4454

  237 : yGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIleSerLeuGlyAspSerValG :  257
        |  !|||||||||   ..!|||  !:!!  !!!!|||! !|||!!!! !|||   !:!||| 
        yValGlyThrValProValGlyArgValGluThrGlyIleIleArgProGlyMetAsnValT
 4453 : TGTAGGTACTGTCCCAGTCGGTCGTGTTGAGACTGGTATCATCAGACCAGGTATGAATGTTA : 4391

  258 : luIleProAlaLeuLysValValLysLysValLysSerMetGlnMetPheHisMetProIle :  277
          .!! !! !!  !   |||..!!  :!!|||||||||:!::!!|||  !|||  !! !!!:
        hrPheAlaProAlaGlyValThrThrGluValLysSerValGluMetHisHisGluGlnMet
 4390 : CCTTCGCTCCAGCTGGTGTTACCACTGAAGTTAAGTCAGTAGAAATGCACCATGAGCAGATG : 4331

  278 : ThrSerAlaMetGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLe :  298
         !!..!|||:!:! !||||||!.!:!!|||.!!  !|||! !.!. !!..!  !|||  !:!
        ProGluAlaValProGlyAspAsnValGlyPheAsnValLysAsnValSerIleLysAspIl
 4330 : CCAGAGGCCGTCCCAGGTGACAACGTTGGTTTCAATGTTAAGAACGTCTCCATCAAGGATAT : 4268

  299 : uGluArgGlyLeuValCysAla :  305
        !:!!||||||!!!|||..!:!!
        eLysArgGlyPheValAlaSer
 4267 : CAAGAGAGGTTTCGTTGCTTCT : 4245

vulgar: eEFSec;SPP00000038 215 305 . gi|126212623|gb|CM000434.1|:subseq(923938,10755) 4514 4244 - 114 M 90 270
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|126212623|gb|CM000434.1|:subseq(923938,10755)	exonerate:protein2genome:local	gene	4245	4514	114	-	.	gene_id 1 ; sequence eEFSec;SPP00000038 ; gene_orientation .
gi|126212623|gb|CM000434.1|:subseq(923938,10755)	exonerate:protein2genome:local	cds	4245	4514	.	-	.	
gi|126212623|gb|CM000434.1|:subseq(923938,10755)	exonerate:protein2genome:local	exon	4245	4514	.	-	.	insertions 0 ; deletions 0
gi|126212623|gb|CM000434.1|:subseq(923938,10755)	exonerate:protein2genome:local	similarity	4245	4514	114	-	.	alignment_id 1 ; Query eEFSec;SPP00000038 ; Align 4515 216 270
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
