Command line: [exonerate -m p2g --showtargetgff -q eEFSec.fa -t eEFSec_Esiliculosus_fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|299508059|emb|FN649760.1|:subseq(17106949,11000) Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, unassigned sequences LGUn
         Model: protein2genome:local
     Raw score: 606
   Query range: 5 -> 325
  Target range: 3648 -> 6563

    6 : ValAsnValAsnValGlyValLeuGlyHisIleAspSerGlyLysThrAlaLeuAlaArgAl :   26
        :!!|||:!!|||||||||:!!|||||||||:!:|||||||||||||||:!!|||!.!!:!||
        LeuAsnIleAsnValGlyIleLeuGlyHisValAspSerGlyLysThrSerLeuValLysAl
 3649 : CTGAATATCAACGTCGGTATCCTGGGCCACGTGGATTCTGGCAAGACTTCGCTTGTCAAAGC : 3709

   27 : aLeuSerThrThrAlaSerThrAlaAlaPheAspLysGlnProGln  >>>> Target In :   42
        ||||||||||..!  !|||||||||:!!.!.||||||.!.||||||            498 
        aLeuSerThrValLeuSerThrAlaSerLeuAspLysAsnProGln++              
 3710 : CCTCAGCACCGTCTTGTCAACAGCATCCCTGGACAAAAACCCACAGgt.............. : 3759

   43 : tron 1 >>>>  SerArgGluArgGlyIleThrLeuAspLeuGlyPheSerCysPheSerV :   58
        bp           |||||||||||||||||||||||||||||||||||||||..!|||!!!|
                   ++SerArgGluArgGlyIleThrLeuAspLeuGlyPheSerAlaPheThrV
 3760 : ...........agTCGCGAGAAAGGGGTATAACGCTTGACCTTGGCTTCTCTGCCTTCACCG : 4303

   59 : alProLeuProAlaArgLeuArg{Se}  >>>> Target Intron 2 >>>>  {r}Ser :   67
        || !!||||||! !!.!|||! !{  }            416 bp           {!}  !
        alSerLeuProGluHisLeuPro{Hi}+-                         ++{s}Leu
 4304 : TGTCGTTACCGGAGCATCTCCCG{CA}gg.........................ag{C}CTA : 4746

   68 : LeuProGluPheGlnAlaAlaProGluAlaGluProGluProGlyGluProLeuLeuGlnVa :   88
          !  !.!.     !  !||||||  !:!!    !!!   !!  !  !! !  !|||!  ..
        ThrGlyHisGluValPheAlaProProSerThrAlaAlaAlaPheThrArgThrLeuProTh
 4747 : ACTGGGCATGAAGTGTTCGCTCCCCCATCAACCGCAGCCGCTTTCACGCGCACACTTCCCAC : 4809

   89 : lThrLeuValAspCysProGlyHisAlaSerLeuIleArgThrIleIleGlyGlyAlaGlnI :  109
        !  !! !|||||||||||||||||||||||||||||||||||||||||||||||||||||||
        rArgGlnValAspCysProGlyHisAlaSerLeuIleArgThrIleIleGlyGlyAlaGlnI
 4810 : CCGGCAGGTAGATTGCCCAGGACACGCTTCTCTGATCCGTACAATTATCGGTGGAGCCCAGA : 4872

  110 : leIleAspLeuMetMetLeuValIleAspValThrLysGlyMetGlnThrGlnSerAlaGlu :  129
        ||!!:|||:!!|||:!!||||||:!!|||!.!|||||||||!!:|||.!!|||!!!.!!|||
        leMetAspMetMetLeuLeuValValAspAlaThrLysGlyIleGlnAlaGlnThrThrGlu
 4873 : TAATGGACATGATGTTGTTGGTGGTAGACGCGACGAAAGGAATACAAGCCCAAACCACGGAG : 4932

  130 : CysLeuValIleGlyGlnIleAlaCysGlnLys<-><-><->LeuValValValLeuAsnLy :  147
        |||:!!|||||||||:!!   !.!   ..!!..         :!!:!!||||||||||||||
        CysValValIleGlyGluAlaValMetSerSerGlyAlaAspValIleValValLeuAsnLy
 4933 : TGCGTGGTGATTGGAGAGGCGGTGATGTCAAGCGGTGCGGATGTCATCGTTGTCCTCAACAA : 4995

  148 : s  >>>> Target Intron 3 >>>>  IleAspLeuLeuProGluGlyLysArgGlnAl :  158
        |            234 bp           :!!||||||:!!||||||  !:!!|||:!!||
        s++                         ++ValAspLeuIleProGluGlnGluArgLysAl
 4996 : Ggt.........................agGTTGATCTCATCCCGGAACAAGAGCGCAAAGC : 5262

  159 : aAlaIleAspLysMetThrLysLysMetGlnLysThrLeuGluAsnThrLysPheArg{G}  :  178
        |  !:!!  !:!!     !! !:!!!!:  !  !  !|||! !...||||||!    !{ } 
        aArgLeuArgGlnAlaGluThrGluIleAlaAlaGlnLeuAlaGlyThrLys***Val{P}+
 5263 : AAGACTTCGTCAAGCTGAAACGGAAATCGCAGCGCAGCTCGCGGGGACCAAGTAAGTC{C}g : 5323

  179 :  >>>> Target Intron 4 >>>>  {ly}AlaProIleIleProValAlaAlaLysPro :  188
                   460 bp           { !}! !|||:!:! !  !|||.!! !!   ! !
        +                         -+{ro}GluProLeuSerGlyValThrProProArg
 5324 : t.........................tg{CG}GAACCCCTGAGCGGGGTAACGCCCCCCCGC : 5812

  189 : GlyGlyProGluAlaProGluThrGluAlaProGlnGlyIleProGluLeuIleGluLeuLe :  209
          !  ! !!..!..! !!|||  !   :!! !!..!||||||  !  !:!!  !! !  !||
        ProProSerSerCysSerGluGluThrSerAlaMetGlyIleAspThrValAlaGlyGluLe
 5813 : CCCCCCTCGTCATGCTCGGAGGAGACTTCGGCGATGGGAATCGACACAGTGGCCGGGGAGTT : 5875

  210 : uThrSerGlnIleSerIleProThrArgAspProSerGlyProPheLeuMetSerValAspH :  230
        |:!! !!!:!  !!!!:!:|||!:!|||    !!|||!.!|||.!!! !.!.:!! !!||||
        uSerArgArgAlaArgValProSerArgArgAlaSerAlaProLeuTyrPheAlaPheAspH
 5876 : GTCGCGGCGAGCAAGAGTGCCTAGTCGGAGAGCCTCTGCCCCTCTCTACTTTGCGTTCGACC : 5938

  231 : isCysPheSerIleLysGlyGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIle :  250
        |||||||||||:!!:::||||||||||||:!!:!:|||||||||:!!|||!!!|||..!:!!
        isCysPheSerValArgGlyGlnGlyThrIleLeuThrGlyThrValLeuThrGlyGluVal
 5939 : ATTGCTTTTCTGTCCGTGGGCAAGGGACCATTCTCACAGGCACTGTTCTTACCGGGGAGGTC : 5998

  251 : Ser  >>>> Target Intron 5 >>>>  LeuGlyAspSerValGluIleProAlaLeu :  261
        !.!            220 bp           :!!..!.!.  !||||||:!!|||:!!|||
        Lys++                         ++ValAsnGlnLeuValGluLeuProSerLeu
 5999 : AAGgt.........................agGTTAATCAGCTGGTCGAGCTTCCATCGCTT : 6251

  262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAla{Me}  :  281
        ::!:!!  !|||||||||||||||||||||||||||!..! !|||:!!:!!! !|||{! } 
        ArgLeuGlnLysLysValLysSerMetGlnMetPheArgLysProValSerIleAla{Ar}+
 6252 : CGGTTGCAGAAGAAGGTCAAGTCGATGCAGATGTTTCGGAAGCCAGTATCCATCGCC{AG}g : 6313

  282 :  >>>> Target Intron 6 >>>>  {t}GlnGlyAspArgLeuGlyIleCysValThrG :  292
                   118 bp           {!}   |||||||||:!!|||!!:||||||.!!.
        +                         ++{g}AlaGlyAspArgValGlyMetCysValAlaS
 6314 : t.........................ag{G}GCTGGTGATCGCGTGGGGATGTGTGTGGCAA : 6462

  293 : lnPheAspProLysLeuLeuGluArgGlyLeuValCysAlaProGluSerLeuHisThrVal :  312
        ...!.||| !!||||||:!!|||||||||:!!|||   .!!|||!  |||:!!... !!:!!
        erLeuAspAlaLysLeuMetGluArgGlyValValThrThrProGlySerValArgProIle
 6463 : GTCTGGACGCAAAGCTCATGGAAAGAGGAGTTGTGACGACTCCGGGTTCTGTGAGACCAATT : 6522

  313 : HisAlaAlaLeuIleSerValGluLysIleProTyrPhe :  325
           ||||||:!!  !  !|||..!|||:!!  !   |||
        SerAlaAlaIleAlaLeuValArgLysValCysArgPhe
 6523 : TCGGCTGCAATCGCTCTCGTCAGAAAGGTTTGTCGGTTC : 6563

vulgar: SPP00000038_1.0 5 325 . gi|299508059|emb|FN649760.1|:subseq(17106949,11000) 3648 6563 + 606 M 36 108 5 0 2 I 0 494 3 0 2 M 24 72 S 0 2 5 0 2 I 0 412 3 0 2 S 1 1 M 74 222 G 0 9 M 7 21 5 0 2 I 0 230 3 0 2 M 30 90 S 0 1 5 0 2 I 0 456 3 0 2 S 1 2 M 73 219 5 0 2 I 0 216 3 0 2 M 29 87 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	gene	3649	6563	606	+	.	gene_id 1 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	3649	3756	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	3649	3756	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	3757	3758	.	+	.	intron_id 1 ; splice_site "GT"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	3757	4254	.	+	.	intron_id 1
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	4253	4254	.	+	.	intron_id 0 ; splice_site "AG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	4255	4328	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	4255	4328	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	4329	4330	.	+	.	intron_id 2 ; splice_site "GG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	4329	4744	.	+	.	intron_id 2
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	4743	4744	.	+	.	intron_id 1 ; splice_site "AG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	4745	4997	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	4745	4997	.	+	.	insertions 9 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	4998	4999	.	+	.	intron_id 3 ; splice_site "GT"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	4998	5231	.	+	.	intron_id 3
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	5230	5231	.	+	.	intron_id 2 ; splice_site "AG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	5232	5322	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	5232	5322	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	5323	5324	.	+	.	intron_id 4 ; splice_site "GT"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	5323	5782	.	+	.	intron_id 4
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	5781	5782	.	+	.	intron_id 3 ; splice_site "TG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	5783	6003	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	5783	6003	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	6004	6005	.	+	.	intron_id 5 ; splice_site "GT"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	6004	6223	.	+	.	intron_id 5
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	6222	6223	.	+	.	intron_id 4 ; splice_site "AG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	6224	6312	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	6224	6312	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice5	6313	6314	.	+	.	intron_id 6 ; splice_site "GT"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	intron	6313	6430	.	+	.	intron_id 6
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	splice3	6429	6430	.	+	.	intron_id 5 ; splice_site "AG"
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	cds	6431	6563	.	+	.	
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	exon	6431	6563	.	+	.	insertions 0 ; deletions 0
gi|299508059|emb|FN649760.1|:subseq(17106949,11000)	exonerate:protein2genome:local	similarity	3649	6563	606	+	.	alignment_id 1 ; Query SPP00000038_1.0 ; Align 3649 6 108 ; Align 4255 42 72 ; Align 4746 67 222 ; Align 4977 141 21 ; Align 5232 148 90 ; Align 5785 179 219 ; Align 6224 252 87 ; Align 6432 282 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
