Command line: [exonerate -E -m p2g --showtargetgff -q SelT_Celegans4b.fa -t SelT_Celegans4b_Ttrahens_fragment1.fa]
Hostname: [rabaza-1215N]

C4 Alignment:
------------
         Query: SelT protein;F28H7.4 b C.elegants #QUERY
        Target: gi|298517504|gb|GL349470.1|:subseq(48651,10000) Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.38, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 125
   Query range: 73 -> 208
  Target range: 4999 -> 5404

   74 : IleLeuTyrCysValSerCysGlyTyrLysGlnAlaPheAsnGlnPheTyrGluPheAlaLy :   94
        :!!  !!:!|||  !|||!! ||||||   .!.  !|||..!   .!!  !:!!     !  
        ValAlaPheCysGlnSer***GlyTyrAlaAsnHisPheArgAlaLeuArgGlnAlaLeuAl
 5000 : GTTGCCTTCTGCCAGTCGTGAGGCTACGCTAACCACTTCCGCGCCCTCCGCCAGGCGCTGGC : 5060

   95 : sGluLysTyrProGlyLeuValIleGluGlyGlyAsnPheSerProAspPheTrpLysGlyC :  115
         ..!      ||||||:!!! !:!!   |||  !|||!:! !!  !!    !   ::!!.!.
        aSerAlaAlaProGlyValGluValIleGlyThrAsnTyrProValGlyThrLeuArgAlaA
 5061 : TTCGGCCGCGCCGGGCGTCGAGGTCATCGGAACCAACTACCCCGTCGGGACCCTTCGGGCGG : 5123

  116 : ysLeuAlaGlnIleValGlyValAlaLysIleGlyLeuIleAlaIleValIleThrGlySer :  135
        .!|||!.!|||!!::!!  ! !!:!!     !  !!!!  !  !:!!|||:!!  !!.!!:!
        laLeuGlyGlnMetIleMetPheSerValProLeuPheAlaLeuValValValTyrAlaAsn
 5124 : CTCTCGGACAGATGATCATGTTCTCCGTCCCTCTCTTTGCCCTCGTTGTTGTCTACGCCAAC : 5183

  136 : AsnProPheGluTyrIleGlyPheGlyTyrProGlnIleLeuGlnThrAlaHisTyrAsnAr :  156
        .!.  !! !!  !:::!!! ! !   !  !|||.!.  !|||!    !  !   !  ::!!:
        GluIleCysAlaTrpLeuAspValProValProAspAlaLeuLeuTyrLeuAlaSerSerLy
 5184 : GAGATCTGTGCCTGGCTTGATGTGCCGGTCCCGGACGCACTGCTTTACCTGGCATCGTCCAA : 5246

  157 : gPheSerTyrSerLeuLeuValPheMetIleGlyAsnLeuPheGluSerThrLeuSerSerT :  177
        !.!!! !:!!! !:!!:!!  !!:!.!.:!!!.!|||:!!.!!!  |||  !|||!!!!!!|
        sLeuMetHisIleValValTyrTyrPheValAlaAsnMetLeuValSerGlnLeuThrThrT
 5247 : GCTCATGCACATTGTCGTCTACTACTTTGTCGCCAACATGCTCGTCTCGCAGCTGACCACCA : 5309

  178 : hrGlyAlaPheGluIlePheLeuGlyAspLysGlnIleTrpSerLysIleSerLysGluArg :  197
        ||||||||||||||:!!!:!:!!! !! !|||! !:!!!::||||||:!!!!!   !  !.!
        hrGlyAlaPheGluLeuTyrValAspGlyLysLeuValPheSerLysLeuThrLeuGlyHis
 5310 : CAGGCGCCTTTGAGCTCTACGTCGACGGCAAGCTGGTCTTCTCCAAGCTCACCCTTGGCCAC : 5369

  198 : ValProThrGlnGluGluPheLeuAsnLeuIle :  208
        !.!|||.!!   !!::!!  !:!!:!!|||:!!
        AlaProAlaIleAspGlnAlaValAspLeuVal
 5370 : GCACCTGCTATCGACCAGGCTGTCGATCTTGTC : 5404

vulgar: SelT 73 208 . gi|298517504|gb|GL349470.1|:subseq(48651,10000) 4999 5404 + 125 M 135 405
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|298517504|gb|GL349470.1|:subseq(48651,10000)	exonerate:protein2genome:local	gene	5000	5404	125	+	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|298517504|gb|GL349470.1|:subseq(48651,10000)	exonerate:protein2genome:local	cds	5000	5404	.	+	.	
gi|298517504|gb|GL349470.1|:subseq(48651,10000)	exonerate:protein2genome:local	exon	5000	5404	.	+	.	insertions 0 ; deletions 0
gi|298517504|gb|GL349470.1|:subseq(48651,10000)	exonerate:protein2genome:local	similarity	5000	5404	125	+	.	alignment_id 1 ; Query SelT ; Align 5000 74 405
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
