Command line: [exonerate -E -m p2g --showtargetgff -q SelT_Celegans4b.fa -t SelT_Celegans4b_Sparasitica_fragment1.fa]
Hostname: [rabaza-1215N]

C4 Alignment:
------------
         Query: SelT protein;F28H7.4 b C.elegants #QUERY
        Target: gi|288565293|gb|GG743904.1|:subseq(129024,10000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.22, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 109
   Query range: 71 -> 216
  Target range: 4993 -> 9426

   72 : LeuThrIleLeuTyrCysValSerCysGlyTyrLysGlnAlaPheAsnGlnPheTyrGluPh :   92
        :!!  !|||  !!:!|||  !|||!! ||||||   .!.  !!:!..!:!! !! ! :!!!:
        ValArgIleGluPheCysSerSer***GlyTyrAlaAsnAsnTyrArgGluValGlnLysTy
 4994 : GTCCGCATCGAGTTTTGCTCGTCCTGAGGCTACGCCAACAACTACCGCGAGGTCCAAAAGTA : 5054

   93 : eAlaLysGluLysTyrProGlyLeuVal<-><->IleGluGlyGlyAsnPheSerProAspP :  111
        !  !:!!!  !!.||||||  !|||:!!      |||..!|||||||||     !|||    
        rLeuGluAlaAsnTyrProHisLeuIleGlyArgIleSerGlyGlyAsnAlaLeuProProP
 5055 : CCTCGAAGCCAACTACCCCCACCTCATCGGCCGCATCTCGGGCGGCAACGCGCTGCCGCCGC : 5117

  112 : heTrpLysGlyCysLeuAlaGlnIleValGlyValAlaLysIleGlyLeuIleAlaIleVal :  131
          ||||||  !   ||||||...:!!:!!|||  !  !:!!!!:!.!  !.!!|||.!!:!!
        roTrpLysGlnGlnLeuAlaSerValIleGlyTyrLeuGlnMetAlaGlyPheAlaPheLeu
 5118 : CGTGGAAGCAGCAGCTCGCGTCCGTCATTGGCTACCTCCAGATGGCCGGCTTCGCCTTCCTC : 5177

  132 : IleThrGlySerAsnProPheGluTyrIleGlyPheGlyTyrProGlnIleLeuGlnThrAl :  152
        :!!.!!|||..!:!!  !.!.!     :!!..!.!!  !     !! !   |||   ..!  
        LeuAlaGlyGluHisIleLeuGlyAlaLeuSerLeuProAlaAspLeuProLeuPheValGl
 5178 : CTCGCGGGCGAGCACATTCTGGGCGCGCTCTCGCTTCCCGCGGACCTGCCGCTGTTTGTGCA : 5240

  153 : aHisTyrAsnArgPheSerTyrSerLeuLeuValPheMetIleGlyAsnLeuPheGluSerT :  173
        !     !.!.!.!   ! !   :!!!!!  !! !.!!||||||  !..!  !.!...!..!:
        nMetArgGluAsnLysPheAlaAlaPheAlaGlyLeuMetIleLeuGlySerMetSerGlnS
 5241 : AATGCGCGAAAACAAGTTTGCGGCCTTTGCCGGGCTCATGATCCTCGGCAGCATGTCGCAGT : 5303

  174 : hrLeuSerSerThrGlyAlaPheGluIlePheLeuGly{A}  >>>> Target Intron  :  186
        !!:!!  !:!!|||||||||||||||:!!!:!!!!..!{|}            46 bp    
        erMetLeuAlaThrGlyAlaPheGluValTyrPheAsn{A}++                   
 5304 : CGATGCTCGCTACCGGCGCGTTCGAAGTCTACTTTAAC{G}gt................... : 5345

  187 : 1 >>>>  {sp}LysGlnIleTrpSerLysIleSerLysGluArgValProThrGlnGlu   :  203
                {||}:!!!  :!!!::||||||||| !!! !.!.|||  !|||:!!..!:!!  
              ++{sp}GluLeuValPheSerLysIleArgMetHisArgTrpProSerMetGln++
 5346 : ......ag{AC}GAGCTCGTCTTTTCCAAGATTCGCATGCACCGATGGCCCTCGATGCAGgt : 5439

  204 : >>>> Target Intron 2 >>>>  GluPheLeuAsnLeuIleAspLeuGlnLeuLysTh :  214
                 3946 bp             !.!!! !   |||:!:|||  !   :!!::!:!
                                 ++ThrLeuTyrValLeuValAspAlaThrMetArgSe
 5440 : .........................agACGCTCTACGTGCTTGTGGATGCAACCATGCGATC : 9418

  215 : rIleArg :  216
        !:!:|||
        rLeuArg
 9419 : GCTGCGG : 9426

vulgar: SelT 71 216 . gi|288565293|gb|GG743904.1|:subseq(129024,10000) 4993 9426 + 109 M 30 90 G 0 6 M 84 252 S 0 1 5 0 2 I 0 42 3 0 2 S 1 2 M 16 48 5 0 2 I 0 3942 3 0 2 M 14 42
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	gene	4994	9426	109	+	.	gene_id 1 ; sequence SelT ; gene_orientation +
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	cds	4994	5342	.	+	.	
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	exon	4994	5342	.	+	.	insertions 6 ; deletions 0
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	splice5	5343	5344	.	+	.	intron_id 1 ; splice_site "GT"
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	intron	5343	5388	.	+	.	intron_id 1
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	splice3	5387	5388	.	+	.	intron_id 0 ; splice_site "AG"
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	cds	5389	5438	.	+	.	
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	exon	5389	5438	.	+	.	insertions 0 ; deletions 0
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	splice5	5439	5440	.	+	.	intron_id 2 ; splice_site "GT"
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	intron	5439	9384	.	+	.	intron_id 2
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	splice3	9383	9384	.	+	.	intron_id 1 ; splice_site "AG"
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	cds	9385	9426	.	+	.	
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	exon	9385	9426	.	+	.	insertions 0 ; deletions 0
gi|288565293|gb|GG743904.1|:subseq(129024,10000)	exonerate:protein2genome:local	similarity	4994	9426	109	+	.	alignment_id 1 ; Query SelT ; Align 4994 72 90 ; Align 5090 102 252 ; Align 5391 187 48 ; Align 9385 203 42
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
