Command line: [exonerate -E -m p2g --showtargetgff -q SelT_Celegans4b.fa -t SelT_Celegans4b_Esiliculosus_fragment1.fa]
Hostname: [rabaza-1215N]

C4 Alignment:
------------
         Query: SelT protein;F28H7.4 b C.elegants #QUERY
        Target: gi|299508026|emb|FN649727.1|:subseq(9194617,10000) Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02:[revcomp]
         Model: protein2genome:local
     Raw score: 109
   Query range: 63 -> 196
  Target range: 5407 -> 4999

   64 : GlyPheSerLysAspLeuProLysLeuThrIleLeuTyrCysValSerCysGlyTyrLysGl :   84
        |||  !.!!   |||:!!|||:!!:!!  !:!!! !!:!|||||||||!! |||   ::!::
        GlySerGlyGlyAspValProGlnValLeuValGlnPheCysValSer***GlyMetArgAr
 5407 : GGTAGTGGTGGCGACGTGCCGCAAGTGCTGGTCCAATTTTGCGTGTCATGAGGCATGCGGAG : 5347

   85 : nAlaPheAsnGlnPheTyrGluPheAlaLysGluLysTyrProGlyLeuVal<-><-><->< :  102
        !  !|||.!.:!!.!!   ..!|||  ! ! ! ! ! ||||||!.!|||!.!          
        gAsnPheGluGluLeuArgSerPheLeuHisAlaHisTyrProAlaLeuAlaLysAlaGlnS
 5346 : GAACTTCGAAGAGCTTCGATCGTTCCTCCACGCACACTACCCCGCTCTCGCCAAGGCGCAGA : 5284

  103 : ->IleGluGlyGlyAsnPheSerProAspPheTrpLysGlyCysLeuAlaGlnIleValGly :  121
          |||..!|||! !  !!:! !!|||  !  !  !     !..!||||||   :!!! !..!
        erIleArgGlyGluLeuTyrProProProProMetAlaGlnAlaLeuAlaThrLeuGlySer
 5283 : GCATCCGGGGGGAGCTTTACCCCCCTCCCCCCATGGCCCAAGCCCTGGCCACCCTCGGTTCC : 5224

  122 : ValAlaLysIleGlyLeuIleAlaIleValIleThrGlySerAsnProPheGluTyrIleGl :  142
          !|||:!!:!:|||  !:!:|||   |||:!:  !||||||  !  !|||!!:   :!!||
        TyrAlaGlnValGlyGlyValAlaSerValLeuPheGlySerLeuIlePheAspArgLeuGl
 5223 : TACGCGCAGGTGGGCGGCGTGGCTTCGGTCCTGTTCGGTTCCCTCATCTTCGACAGGCTCGG : 5161

  143 : yPheGlyTyrProGlnIleLeuGlnThrAlaHisTyrAsnArgPheSerTyrSerLeuLeuV :  163
        | !!  !   |||   .!!:!!! !..!  !!..  !|||! !.!.:!!   !!!:!!:!!!
        yValProAlaProPhePheValProValMetArgArgAsnProMetAla---ThrIleValG
 5160 : GGTCCCGGCGCCGTTCTTCGTACCGGTGATGCGGCGCAATCCGATGGCA---ACGATAGTGG : 5101

  164 : alPheMetIleGlyAsnLeuPheGluSerThrLeuSerSerThrGlyAlaPheGluIlePhe :  183
         !.!!!  :!!!.!|||! !|||   .!!:!!|||! !:!!|||||||||||||||:!:! !
        lyLeuThrValAlaAsnSerPheCysGlySerLeuLeuAlaThrGlyAlaPheGluValSer
 5100 : GGCTTACCGTAGCGAACTCGTTCTGCGGCTCCCTTTTGGCGACCGGCGCCTTCGAGGTGTCC : 5041

  184 : LeuGlyAspLysGlnIleTrpSerLysIleSerLysGlu :  196
        :!!! !!  :!!! !:!:!::|||::!:!::!!  !|||
        IleAspGlyGluLeuValPheSerArgLeuAlaGlyGlu
 5040 : ATCGACGGGGAACTGGTGTTCTCGCGGCTGGCAGGAGAG : 5000

vulgar: SelT 63 196 . gi|299508026|emb|FN649727.1|:subseq(9194617,10000) 5407 4999 - 109 M 38 114 G 0 12 M 57 171 G 1 0 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|299508026|emb|FN649727.1|:subseq(9194617,10000)	exonerate:protein2genome:local	gene	5000	5407	109	-	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|299508026|emb|FN649727.1|:subseq(9194617,10000)	exonerate:protein2genome:local	cds	5000	5407	.	-	.	
gi|299508026|emb|FN649727.1|:subseq(9194617,10000)	exonerate:protein2genome:local	exon	5000	5407	.	-	.	insertions 12 ; deletions 1
gi|299508026|emb|FN649727.1|:subseq(9194617,10000)	exonerate:protein2genome:local	similarity	5000	5407	109	-	.	alignment_id 1 ; Query SelT ; Align 5408 64 114 ; Align 5282 102 171 ; Align 5111 160 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
