Command line: [exonerate -m p2g --showtargetgff -q SelT_Celegans3b.fa -t SelT_Celegans3b_Sparasitica_fragment1.fa]
Hostname: [rabaza-1215N]

C4 Alignment:
------------
         Query: SelT protein;C35C5.3b C.elegants #QUERY 
        Target: gi|288565293|gb|GG743904.1|:subseq(129018,10000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.22, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 102
   Query range: 97 -> 209
  Target range: 4999 -> 5341

   98 : LeuArgIlePheTyrCysValSerCysGlyTyrLysGlnAlaPheAspGlnPheThrThrPh :  118
        :!!||||||   !:!|||  !|||!! ||||||   .!.  !!:!  !:!! !!  !! !!:
        ValArgIleGluPheCysSerSer***GlyTyrAlaAsnAsnTyrArgGluValGlnLysTy
 5000 : GTCCGCATCGAGTTTTGCTCGTCCTGAGGCTACGCCAACAACTACCGCGAGGTCCAAAAGTA : 5060

  119 : eAlaLysGluLysTyrProAsnMet<-><->ProIleGluGlyAlaAsnPheAlaProValL :  137
        !  !:!!!  !!.||||||:!!:!:      ! !|||..!|||!.!|||     !|||  !!
        rLeuGluAlaAsnTyrProHisLeuIleGlyArgIleSerGlyGlyAsnAlaLeuProProP
 5061 : CCTCGAAGCCAACTACCCCCACCTCATCGGCCGCATCTCGGGCGGCAACGCGCTGCCGCCGC : 5123

  138 : euTrpLysAlaTyrValAlaGlnAlaLeuSerPheValLysMetAlaValLeuValLeuVal :  157
         !||||||  ! ! :!!|||...!.!:!!.!!!:!:!!:!!||||||! !!!!!.!!!!:!!
        roTrpLysGlnGlnLeuAlaSerValIleGlyTyrLeuGlnMetAlaGlyPheAlaPheLeu
 5124 : CGTGGAAGCAGCAGCTCGCGTCCGTCATTGGCTACCTCCAGATGGCCGGCTTCGCCTTCCTC : 5183

  158 : LeuGlyGlyIleAsnProPheGluArgPheGlyLeuGlyTyrProGlnIleLeuGlnHisAl :  178
        |||!.!|||   :!!  !.!.!    !.!!..!|||  !     !! !   |||        
        LeuAlaGlyGluHisIleLeuGlyAlaLeuSerLeuProAlaAspLeuProLeuPheValGl
 5184 : CTCGCGGGCGAGCACATTCTGGGCGCGCTCTCGCTTCCCGCGGACCTGCCGCTGTTTGTGCA : 5246

  179 : aHisGlyAsnLysMetSerSerCysMetLeuValPheMetLeuGlyAsnLeuValGluGlnS :  199
        !    !!.!.!!.! !! !:!!..!.!.  !! !.!!|||:!!  !..!  !:!!..!||||
        nMetArgGluAsnLysPheAlaAlaPheAlaGlyLeuMetIleLeuGlySerMetSerGlnS
 5247 : AATGCGCGAAAACAAGTTTGCGGCCTTTGCCGGGCTCATGATCCTCGGCAGCATGTCGCAGT : 5309

  200 : erLeuIleSerThrGlyAlaPheGluValTyr :  209
        ||:!!:!!:!!|||||||||||||||||||||
        erMetLeuAlaThrGlyAlaPheGluValTyr
 5310 : CGATGCTCGCTACCGGCGCGTTCGAAGTCTAC : 5341

vulgar: SelT 97 209 . gi|288565293|gb|GG743904.1|:subseq(129018,10000) 4999 5341 + 102 M 29 87 G 0 6 M 83 249
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|288565293|gb|GG743904.1|:subseq(129018,10000)	exonerate:protein2genome:local	gene	5000	5341	102	+	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|288565293|gb|GG743904.1|:subseq(129018,10000)	exonerate:protein2genome:local	cds	5000	5341	.	+	.	
gi|288565293|gb|GG743904.1|:subseq(129018,10000)	exonerate:protein2genome:local	exon	5000	5341	.	+	.	insertions 6 ; deletions 0
gi|288565293|gb|GG743904.1|:subseq(129018,10000)	exonerate:protein2genome:local	similarity	5000	5341	102	+	.	alignment_id 1 ; Query SelT ; Align 5000 98 87 ; Align 5093 127 249
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
