Command line: [exonerate -m p2g --showtargetgff -q SelT_Celegants2 -t fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelT protein;F28H7.4 b C.elegants #QUERY
        Target: gi|217405547|gb|CM000619.1|:subseq(76805,20527) Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 127
   Query range: 71 -> 206
  Target range: 9922 -> 9499

   72 : LeuThrIleLeuTyrCysValSerCysGlyTyrLysGlnAlaPheAsnGlnPheTyrGluPh :   92
        :!!! !||||||!:!|||  !.!!!! |||   |||::!  !|||   .!. !  ! :!!||
        ValLysIleLeuPheCysAsnGly***GlyMetLysArgAsnPheLeuAsnValGlnLysPh
 9922 : GTAAAGATTCTGTTCTGCAACGGGTGAGGTATGAAGAGGAACTTTTTGAATGTGCAAAAGTT : 9862

   93 : eAlaLysGluLysTyrProGlyLeu<-><->ValIleGluGlyGlyAsnPheSerProAspP :  111
        |  !:!!!!::!!!:!|||! !|||        !|||  !|||!.!|||!:! !!|||    
        eLeuGluAspGlnPheProGluLeuArgGlyHisIleThrGlyAlaAsnTyrProProProA
 9861 : CCTCGAAGACCAGTTTCCCGAATTACGGGGGCACATTACGGGGGCCAACTACCCCCCACCAG : 9799

  112 : heTrpLysGlyCysLeuAlaGlnIleValGlyValAlaLysIle<->GlyLeuIleAlaIle :  130
             !  ! !     !|||.!.:!!:!!..!|||  !:!!:!!   |||:!!.!!  !|||
        laThrIleGluLeuAlaAlaAsnLeuMetSerValIleGlnLeuMetGlyIlePheTrpIle
 9798 : CGACAATCGAACTAGCGGCCAACCTCATGTCCGTCATACAGCTCATGGGTATTTTCTGGATC : 9739

  131 : ValIleThrGlySerAsnProPheGluTyrIleGlyPhe<-><-><->GlyTyrProGlnIl :  148
        |||     !|||..!!!.  !|||..!!:!:!:|||!:!           !   |||...:!
        ValAlaGlyGlyGluLysIlePheArgPheLeuGlyTyrProGlnAsnGlnLeuProSerVa
 9738 : GTCGCGGGTGGAGAAAAAATCTTTCGGTTCCTGGGCTATCCTCAAAATCAACTGCCTAGTGT : 9676

  149 : eLeuGlnThrAlaHisTyrAsnArgPheSerTyrSerLeuLeuValPheMetIleGlyAsnL :  169
        !! !!!.|||  !:!! ! |||  !.!. !!  !.!!:!!!!!:!!|||:!!|||  !   !
        lTyrHisThrIleAsnGlnAsnAlaMetProIleGlyIlePheLeuPheLeuIleLeuProG
 9675 : CTATCATACCATCAACCAGAATGCGATGCCGATTGGCATTTTCTTGTTTCTGATTCTGCCGC : 9613

  170 : euPheGluSerThrLeuSerSerThrGlyAlaPheGluIlePheLeuGlyAspLysGlnIle :  189
         !!::   .!!  !! !!!!..!|||||||||||||||:!!!:!|||..!||||||:!!|||
        lnTrpIleGlyArgTyrThrGlnThrGlyAlaPheGluValTyrLeuAsnAspLysGluIle
 9612 : AGTGGATTGGACGATATACCCAAACGGGAGCTTTTGAAGTTTATCTAAATGACAAAGAGATC : 9553

  190 : TrpSerLysIleSerLysGluArgValProThrGlnGluGluPheLeuAsn :  206
        !::||||||:!!||||||! !  ! !!||||||   !!:!!:.!.:!!::!
        PheSerLysLeuSerLysGlyAlaPheProThrAlaAspAspLeuIleSer
 9552 : TTCAGTAAGCTTTCGAAGGGAGCTTTTCCGACCGCTGACGACCTGATTTCT : 9500

vulgar: SelT 71 206 . gi|217405547|gb|CM000619.1|:subseq(76805,20527) 9922 9499 - 127 M 29 87 G 0 6 M 25 75 G 0 3 M 18 54 G 0 9 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217405547|gb|CM000619.1|:subseq(76805,20527)	exonerate:protein2genome:local	gene	9500	9922	127	-	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|217405547|gb|CM000619.1|:subseq(76805,20527)	exonerate:protein2genome:local	cds	9500	9922	.	-	.	
gi|217405547|gb|CM000619.1|:subseq(76805,20527)	exonerate:protein2genome:local	exon	9500	9922	.	-	.	insertions 18 ; deletions 0
gi|217405547|gb|CM000619.1|:subseq(76805,20527)	exonerate:protein2genome:local	similarity	9500	9922	127	-	.	alignment_id 1 ; Query SelT ; Align 9923 72 87 ; Align 9830 101 75 ; Align 9752 126 54 ; Align 9689 144 189
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
