Command line: [exonerate -E -m p2g --showtargetgff -q SelT_musmusculus.fa -t SelTMmusculus_Ptricornitum_fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelT protein;ENSMUSP00000103557 Mus musculus #QUERY
        Target: gi|217405547|gb|CM000619.1|:subseq(81766,11000) Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 118
   Query range: 27 -> 177
  Target range: 5000 -> 4532

   28 : SerLysArgLeuLysMetGlnTyrAlaThrGlyProLeuLeuLysPheGlnIleCysValSe :   48
        |||   |||:!!|||!  ..! ! ! !.!!!.!! !! !:!!|||.!!! !.!!|||  !.!
        SerProArgIleLysAsnMetGluAspAlaAlaGlnHisValLysIleLeuPheCysAsnGl
 5000 : TCTCCTCGTATCAAGAACATGGAAGACGCCGCGCAGCACGTAAAGATTCTGTTCTGCAACGG : 4940

   49 : rUnkGlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArgTyrProAspI :   69
        !   |||   !:!|||  !|||  !.!.   ...!:! !!:!!..!.!.!:!!:!|||!!::
        y***GlyMetLysArgAsnPheLeuAsnValGlnLysPheLeuGluAspGlnPheProGluL
 4939 : GTGAGGTATGAAGAGGAACTTTTTGAATGTGCAAAAGTTCCTCGAAGACCAGTTTCCCGAAT : 4877

   70 : leArg<-><->IleGluGlyGluAsnTyrLeuProGlnProIleTyrArgHisIleAlaSer :   87
        !!|||      |||  !|||!  ||||||! !|||! ! !!! !  !..!!     |||!:!
        euArgGlyHisIleThrGlyAlaAsnTyrProProProAlaThrIleGluLeuAlaAlaAsn
 4876 : TACGGGGGCACATTACGGGGGCCAACTACCCCCCACCAGCGACAATCGAACTAGCGGCCAAC : 4817

   88 : PheLeuSerValPheLysLeuValLeuIleGlyLeuIleIleValGlyLysAspPro<->Ph :  107
        .!!:!!||||||.!.:!!|||:!!  !|||  !! !|||:!!!.!|||  !!!:  !   ||
        LeuMetSerValIleGlnLeuMetGlyIlePheTrpIleValAlaGlyGlyGluLysIlePh
 4816 : CTCATGTCCGTCATACAGCTCATGGGTATTTTCTGGATCGTCGCGGGTGGAGAAAAAATCTT : 4754

  108 : eAlaPhePheGlyMet<-><-><->GlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnL :  125
        |  !|||.!.|||            |||  !||||||:!!!::!!.     !.!.:!!||| 
        eArgPheLeuGlyTyrProGlnAsnGlnLeuProSerValTyrHisThrIleAsnGlnAsnA
 4753 : TCGGTTCCTGGGCTATCCTCAAAATCAACTGCCTAGTGTCTATCATACCATCAACCAGAATG : 4691

  126 : ysValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetSer :  145
         !:!!     ! !!!!:.!.:!!|||.!.:!!  !   ..!      ...!:!! !!  ..!
        laMetProIleGlyIlePheLeuPheLeuIleLeuProGlnTrpIleGlyArgTyrThrGln
 4690 : CGATGCCGATTGGCATTTTCTTGTTTCTGATTCTGCCGCAGTGGATTGGACGATATACCCAA : 4631

  146 : ThrGlyAlaPheGluIleThrLeuAsnAspValProValTrpSerLysLeuGluSerGlyHi :  166
        |||||||||||||||:!!  !|||||||||  !  !:!!!::|||||||||..!!.!|||  
        ThrGlyAlaPheGluValTyrLeuAsnAspLysGluIlePheSerLysLeuSerLysGlyAl
 4630 : ACGGGAGCTTTTGAAGTTTATCTAAATGACAAAGAGATCTTCAGTAAGCTTTCGAAGGGAGC : 4568

  167 : sLeuProSerMetGlnGlnLeuValGlnIleLeu :  177
        !!!!|||!!!   .!..!.|||:!!...  !|||
        aPheProThrAlaAspAspLeuIleSerSerLeu
 4567 : TTTTCCGACCGCTGACGACCTGATTTCTTCTTTG : 4533

vulgar: SelT 27 177 . gi|217405547|gb|CM000619.1|:subseq(81766,11000) 5000 4532 - 118 M 43 129 G 0 6 M 36 108 G 0 3 M 6 18 G 0 9 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217405547|gb|CM000619.1|:subseq(81766,11000)	exonerate:protein2genome:local	gene	4533	5000	118	-	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|217405547|gb|CM000619.1|:subseq(81766,11000)	exonerate:protein2genome:local	cds	4533	5000	.	-	.	
gi|217405547|gb|CM000619.1|:subseq(81766,11000)	exonerate:protein2genome:local	exon	4533	5000	.	-	.	insertions 18 ; deletions 0
gi|217405547|gb|CM000619.1|:subseq(81766,11000)	exonerate:protein2genome:local	similarity	4533	5000	118	-	.	alignment_id 1 ; Query SelT ; Align 5001 28 129 ; Align 4866 71 108 ; Align 4755 107 18 ; Align 4728 113 195
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
