Command line: [exonerate -E -m p2g --showtargetgff -q SelT_Celegans3B.fa -t SelT3bCelegants_Cparvum_fragment1.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelT protein;C35C5.3b C.elegants #QUERY 
        Target: gi|298517504|gb|GL349470.1|:subseq(53651,11000) Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.38, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 115
   Query range: 101 -> 234
  Target range: 5 -> 404

 102 : TyrCysValSerCysGlyTyrLysGlnAlaPheAspGlnPheThrThrPheAlaLysGluLysT : 123
       !:!|||  !|||!! ||||||   .!.  !|||  !   .!!  !  !     !   ..!    
       PheCysGlnSer***GlyTyrAlaAsnHisPheArgAlaLeuArgGlnAlaLeuAlaSerAlaA
   6 : TTCTGCCAGTCGTGAGGCTACGCTAACCACTTCCGCGCCCTCCGCCAGGCGCTGGCTTCGGCCG :  69

 124 : yrProAsnMetProIleGluGlyAlaAsnPheAlaProValLeuTrpLysAlaTyrValAlaGl : 144
         |||..!:!:  !:!!   |||.!!|||!:! !!  !! !  !   ::!|||  !:!!!.!||
       laProGlyValGluValIleGlyThrAsnTyrProValGlyThrLeuArgAlaAlaLeuGlyGl
  70 : CGCCGGGCGTCGAGGTCATCGGAACCAACTACCCCGTCGGGACCCTTCGGGCGGCTCTCGGACA : 132

 145 : nAlaLeuSerPheValLysMetAlaValLeuValLeuValLeuGlyGlyIleAsnProPheGlu : 165
       |  !:!!! !|||  !        ! !!  !:!!:!!|||:!!  !!.!! !.!.  !! !!  
       nMetIleMetPheSerValProLeuPheAlaLeuValValValTyrAlaAsnGluIleCysAla
 133 : GATGATCATGTTCTCCGTCCCTCTCTTTGCCCTCGTTGTTGTCTACGCCAACGAGATCTGTGCC : 195

 166 : ArgPheGlyLeuGlyTyrProGlnIleLeuGlnHisAlaHisGlyAsnLysMetSerSerCysM : 187
        !!.!!! !:!!  !  !|||.!.  !|||!  :!!  !   ..!::!|||:!:! !  !  !:
       TrpLeuAspValProValProAspAlaLeuLeuTyrLeuAlaSerSerLysLeuMetHisIleV
 196 : TGGCTTGATGTGCCGGTCCCGGACGCACTGCTTTACCTGGCATCGTCCAAGCTCATGCACATTG : 261

 188 : etLeuValPheMetLeuGlyAsnLeuValGluGlnSerLeuIleSerThrGlyAlaPheGluVa : 208
       !::!!  !!:!.!.:!!!.!|||:!!:!!!  ..!..!|||! !!!!|||||||||||||||:!
       alValTyrTyrPheValAlaAsnMetLeuValSerGlnLeuThrThrThrGlyAlaPheGluLe
 262 : TCGTCTACTACTTTGTCGCCAACATGCTCGTCTCGCAGCTGACCACCACAGGCGCCTTTGAGCT : 324

 209 : lTyrLeuGlyAsnGluGlnIleTrpSerLysIleGluSerGlyArgValProSerProGlnGlu : 229
       !|||:!!! !..!:!!! !:!!!::||||||:!!     !|||!.!!.!|||:!!  !.!.:!!
       uTyrValAspGlyLysLeuValPheSerLysLeuThrLeuGlyHisAlaProAlaIleAspGln
 325 : CTACGTCGACGGCAAGCTGGTCTTCTCCAAGCTCACCCTTGGCCACGCACCTGCTATCGACCAG : 387

 230 : PheMetGlnLeuIle : 234
         !:!:.!.|||:!!
       AlaValAspLeuVal
 388 : GCTGTCGATCTTGTC : 404

vulgar: SelT 101 234 . gi|298517504|gb|GL349470.1|:subseq(53651,11000) 5 404 + 115 M 133 399
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|298517504|gb|GL349470.1|:subseq(53651,11000)	exonerate:protein2genome:local	gene	6	404	115	+	.	gene_id 1 ; sequence SelT ; gene_orientation .
gi|298517504|gb|GL349470.1|:subseq(53651,11000)	exonerate:protein2genome:local	cds	6	404	.	+	.	
gi|298517504|gb|GL349470.1|:subseq(53651,11000)	exonerate:protein2genome:local	exon	6	404	.	+	.	insertions 0 ; deletions 0
gi|298517504|gb|GL349470.1|:subseq(53651,11000)	exonerate:protein2genome:local	similarity	6	404	115	+	.	alignment_id 1 ; Query SelT ; Align 6 102 399
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
