T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=85
*
 BAD AVG GOOD
*
H.arabidopsidis   :  88
P.ultimum         :  88
S.parasitica      :  81
SelJ_tetraodon_   :  82
cons              :  85

H.arabidopsidis   ---------VVALYAGTNQLFTKVDELVKVFYVGTRVRDAALVAA
P.ultimum         IDVIALIPVVVALYAGTNSLFTKVDELVKVFYSGQRVRDAALVAA
S.parasitica      --GLNKVPLLVARYAGKPELLDVVRQAVLVHQTTPLAIDVAIAGA
SelJ_tetraodon_   MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAA

cons                       :** ***. .::  * : * *          ::..*


H.arabidopsidis   FVLEQVILGASVLQAMRMSIR-TERLSVKQ----RKVIFKAFTKS
P.ultimum         FILEQVILGASVLQAMRMSIR-TERLTVKQ----RKMIFKAFTKS
S.parasitica      IILEAVVVKQSSIKDAITAARSDARVEASVQALIQGVLDDAVASS
SelJ_tetraodon_   RFLEHFILNGPDPTALESVIR-QLRDPNRKQ---AQDLDQAVVGH

cons               .** .::  .         *   *            : .*..  


H.arabidopsidis   QLPSYEAIQKFGNRG------------SLPGGFHAVLQPLFVLND
P.ultimum         QLPSYEAIQKFGNKG------------SLPRGFFAVLQPLFVLSD
S.parasitica      D--VHAAVAKYGKSC------------PLPGSFQSGLFVLLTDGQ
SelJ_tetraodon_   I---HQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATN

cons                  : .  : .:               ** .* : *  ::.  :


H.arabidopsidis   YPTAVRENIIGGGRTCRRAMFIGACFAAQDGLDVIPEGWIQKTQY
P.ultimum         YPTAVRENIIGGGRTCRRAMFIGACFAAQDGLDAIPESWIKKTQY
S.parasitica      YVSSVTKNITAGGDNCGRSIFVGAVAAAAT-DSPTPDAWQHKMTR
SelJ_tetraodon_   YVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR

cons              *  :* ..:  ** .* *. *:**  .*    .  * .*  :   


H.arabidopsidis   FDF------------I
P.ultimum         YDVIETDANTLI--SY
S.parasitica      ---------------F
SelJ_tetraodon_   YESVLEHAKKITSHLQ

cons