#!/bin/bash

for genome

in Trichomonas_vaginalis Trypanosoma_brucei Plasmodium_yoelii Plasmodium_vivax Paramecium_tetraurelia Plasmodium_knowlesi Phytophthora_infestans Plasmodium_gallinaceum Plasmodium_falciparum Leishmania_major Leishmania_infantum Cryptosporidium_hominis Babesia_bigemina Toxoplasma_gondii_GT1 Perkinsus_marinus Plasmodium_chabaudi Plasmodium_berghei Neospora_caninum Leishmania_mexicana Leishmania_braziliensis Eimeria_tenella Entamoeba_invadens Emiliania_huxleyi Entamoeba_dispar Dictyostelium_purpureum Aureococcus_anophagefferens Thalassiosira_pseudonana Theileria_parva Trypanosoma_cruzi Theileria_annulata Phytophthora_sojae Phytophthora_ramorum Monosiga_brevicollis Giardia_intestinalis Entamoeba_terrapinae Entamoeba_histolytica Babesia_bovis ; do { blastdb=`grep $genome /cursos/BI/genomes/protists/genomes_list_and_info.tab | cut -f 4`

blastall -p tblastn -i ~/novell/home/treball/Fep15/Fep15Peix.fa -d $blastdb -o ~/novell/home/treball/Fep15/Fep15vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/Lmsel1/Lmsel1Leishmania.fa -d $blastdb -o ~/novell/home/treball/Lmsel1/Lmsel1vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/Sel15/Sel15Celegans.fa -d $blastdb -o ~/novell/home/treball/Sel15/Sel15vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/Sel3/Sel3Pfalciparum.fa -d $blastdb -o ~/novell/home/treball/Sel3/Sel3vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/SelM/SelMmouse.fa -d $blastdb -o ~/novell/home/treball/SelM/SelMvs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/SelP/SelPximpanze.fa -d $blastdb -o ~/novell/home/treball/SelP/SelPvs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/SelU/SelUCelegans.fa -d $blastdb -o ~/novell/home/treball/SelU/SelUvs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/Sps2/Sps2Anopheles.fa -d $blastdb -o ~/novell/home/treball/Sps2/Sps2vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/SBP2/SBP2.fa -d $blastdb -o ~/novell/home/treball/SBP2/SBP2vs$genome.taula.tblastn -m9 -e 0.001
blastall -p tblastn -i ~/novell/home/treball/eEFsec/eEFsec.fa -d $blastdb -o ~/novell/home/treball/eEFsec/eEFsecvs$genome.taula.tblastn -m9 -e 0.001

} done