BLASTP 2.2.23+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: UMHJRN0Y016


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           10,635,453 sequences; 3,627,481,469 total letters
Query=  SelM.Thalassioira_pseudonana.
gi|209487133|gb|AAFD02000028.1|:subseq(10000,12000).pep
Length=79


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

ref|NP_536355.1|  selenoprotein M precursor [Homo sapiens] >sp...  41.6    6e-04

ALIGNMENTS
>ref|NP_536355.1| selenoprotein M precursor [Homo sapiens]
 sp|Q8WWX9.3|SELM_HUMAN RecName: Full=Selenoprotein M; Short=SelM; Flags: Precursor
 gb|AAK95397.1| selenoprotein SelM [Homo sapiens]
 gb|AAH30236.1| Selenoprotein M [Homo sapiens]
 gb|AAH13421.1| Selenoprotein M [Homo sapiens]
 gb|AAH68004.1| Selenoprotein M [Homo sapiens]
Length=145

 Score = 41.6 bits (96),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query  3    IESCSGXALNRLPELKSFLKDLNGVDLYKNVEVHFISGKRAVLTIFEGGR--ELEKITLS  60
            +E+C G  LNRL E+K+F+     +  Y N+ +  + G    L +  G R  ELE+I LS
Sbjct  42   VETCGGUQLNRLKEVKAFVT--QDIPFYHNLVMKHLPGADPELVLL-GRRYEELERIPLS  98

Query  61   DYNDKEKLHTLFAEKGFVK  79
            +   +E+++ L  E GF +
Sbjct  99   EMT-REEINALVQELGFYR  116



  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Mar 22, 2010  5:43 PM
  Number of letters in database: 82,119,894
  Number of sequences in database:  230,407

Lambda     K      H
   0.318    0.140    0.392 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 230407
Number of Hits to DB: 1820418
Number of extensions: 59437
Number of successful extensions: 104
Number of sequences better than 100: 2
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 82119894
Length adjustment: 50
Effective length of query: 29
Effective length of database: 70599544
Effective search space: 2047386776
Effective search space used: 2047386776
T: 11
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 52 (24.6 bits)