BLASTP 2.2.23+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: UMJAB1YX013 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 10,635,453 sequences; 3,627,481,469 total letters Query= Sel3.Plasmodium_yoelii.1 located on Plasmodium_yoelii_yoelii_str._17XNL|MALPY01723|2002-09-10|ds-DNA| Plasmodium_yoelii_TIGR [translate(1)] Length=339 Score E Sequences producing significant alignments: (Bits) Value emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] 252 2e-67 ref|XP_001349374.1| hypothetical protein [Plasmodium falcipar... 227 4e-60 ref|XP_001349231.1| hypothetical protein [Plasmodium falcipar... 31.6 0.47 emb|CAX64166.1| conserved Plasmodium protein, unknown functio... 31.6 0.50 emb|CAX64284.1| conserved Plasmodium protein, unknown functio... 29.6 1.9 ref|XP_001349811.1| hypothetical protein [Plasmodium falcipar... 29.6 1.9 ref|XP_001349553.1| conserved Plasmodium protein [Plasmodium ... 27.7 6.9 ALIGNMENTS >emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] Length=351 Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 169/352 (48%), Positives = 225/352 (63%), Gaps = 15/352 (4%) Query 1 MVLKRVYLFVVFILFYISIQYADAGXSKTLHIKLPNEDDDYLGKLINIFNNICTYSLNNK 60 M+LK+VY+ ++ IL I + D+G SK LHIKLP+EDDDYL KLI +FN+ICTYS+NNK Sbjct 1 MILKKVYILIILILLSILSRTVDSGUSKQLHIKLPDEDDDYLAKLIGVFNDICTYSINNK 60 Query 61 KKIAKIITTSLLSGYTLNSLYNSGITFKKNPHYSLFFPSNEYIKNVFKKLKKNYEIKTK- 119 +KIAKI++TS +S YT+ SLYNSGITFKKNPHYS F PS +YI + K Sbjct 61 EKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLPSQKYILKIINNNVNIQNNDIKK 120 Query 120 ---LKKDQIFERDITWYDNQSINNVEIYVSNNLKNFLSFFPNKLKLTSLYNFSKYEEFKD 176 LK IFER T+ + +I + Y+ NN NF++F P KLK SLYNFSKY+EF Sbjct 121 IDNLKDIPIFER--TFTNKHNIQMSKTYILNNFINFINFLPYKLKKESLYNFSKYKEFDG 178 Query 177 LK---NLFNYVKVMKHQNDIFIFHGKLKKHFWIHIPMKYNITKSETGDTTT--LTIIPLY 231 LK N F V+V+ H+++I ++ K KKH+WIH+P KYNI K +TT+ L IPLY Sbjct 179 LKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLY 238 Query 232 KYYSDYVIEIQFVKQNN--NMKFITSIKSKENNKKNTNLYYKNIIKNIAMYFTYDLFNGI 289 KYYS+Y+I+++ NN N+ F + IK ++ N ++ +IIKNI+ + TYD+ N I Sbjct 239 KYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITYDIINAI 298 Query 290 HNNLDIFYKRGVKLRKISFIRPNNLLS--KKNSKGTTYRAPLFKHYKLKTKR 339 NN++I Y R VK K +FI N L KN K + P FK K KR Sbjct 299 DNNINILYMRNVKPGKYNFINTTNALQKKTKNYKKKKFTLPSFKSLPFKFKR 350 >ref|XP_001349374.1| hypothetical protein [Plasmodium falciparum 3D7] Length=331 Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/317 (47%), Positives = 200/317 (63%), Gaps = 15/317 (4%) Query 36 NEDDDYLGKLINIFNNICTYSLNNKKKIAKIITTSLLSGYTLNSLYNSGITFKKNPHYSL 95 NEDDDYL KLI +FN+ICTYS+NNK+KIAKI++TS +S YT+ SLYNSGITFKKNPHYS Sbjct 16 NEDDDYLAKLIGVFNDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSF 75 Query 96 FFPSNEYIKNVFKKLKKNYEIKTK----LKKDQIFERDITWYDNQSINNVEIYVSNNLKN 151 F PS +YI + K LK IFER T+ + +I + Y+ NN N Sbjct 76 FLPSQKYILKIINNNVNIQNNDIKKIDNLKDIPIFER--TFTNKHNIQMSKTYILNNFIN 133 Query 152 FLSFFPNKLKLTSLYNFSKYEEFKDLK---NLFNYVKVMKHQNDIFIFHGKLKKHFWIHI 208 F++F P KLK SLYNFSKY+EF LK N F V+V+ H+++I ++ K KKH+WIH+ Sbjct 134 FINFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHL 193 Query 209 PMKYNITKSETGDTTT--LTIIPLYKYYSDYVIEIQFVKQNN--NMKFITSIKSKENNKK 264 P KYNI K +TT+ L IPLYKYYS+Y+I+++ NN N+ F + IK ++ Sbjct 194 PFKYNIIKISDDNTTSYILMFIPLYKYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHI 253 Query 265 NTNLYYKNIIKNIAMYFTYDLFNGIHNNLDIFYKRGVKLRKISFIRPNNLLS--KKNSKG 322 N ++ +IIKNI+ + TYD+ N I NN++I Y R VK K +FI N L KN K Sbjct 254 QNNSFHYDIIKNISKHITYDIINAIDNNINILYMRNVKPGKYNFINTTNALQKKTKNYKK 313 Query 323 TTYRAPLFKHYKLKTKR 339 + P FK K KR Sbjct 314 KKFTLPSFKSLPFKFKR 330 >ref|XP_001349231.1| hypothetical protein [Plasmodium falciparum 3D7] Length=2130 Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query 276 NIAMYFTYDLFNGIHNNLDIFYKRGVKLRKISFIRPNNLLSKKN-----SKGTTYRAPLF 330 NI +Y + D++ + NN + YK+ + K + P + + K SKG+T R L Sbjct 72 NIKIYKSKDIYKNVDNNQNYVYKQEKIITKRKYTNPKDEIGKNKKKMTFSKGSTERILLI 131 Query 331 KHYKLKTKR 339 KH K K+ Sbjct 132 KHNKKDVKK 140 >emb|CAX64166.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length=2216 Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query 276 NIAMYFTYDLFNGIHNNLDIFYKRGVKLRKISFIRPNNLLSKKN-----SKGTTYRAPLF 330 NI +Y + D++ + NN + YK+ + K + P + + K SKG+T R L Sbjct 72 NIKIYKSKDIYKNVDNNQNYVYKQEKIITKRKYTNPKDEIGKNKKKMTFSKGSTERILLI 131 Query 331 KHYKLKTKR 339 KH K K+ Sbjct 132 KHNKKDVKK 140 >emb|CAX64284.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length=6147 Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query 257 KSKENNKKNTNLYY--KNIIKNIAMYFTYDLFNGI 289 K+KENN NLYY N +KNI +Y YD+FN + Sbjct 6051 KTKENNIFKNNLYYIKMNNMKNICLYDDYDIFNNL 6085 >ref|XP_001349811.1| hypothetical protein [Plasmodium falciparum 3D7] Length=6088 Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query 257 KSKENNKKNTNLYY--KNIIKNIAMYFTYDLFNGI 289 K+KENN NLYY N +KNI +Y YD+FN + Sbjct 5992 KTKENNIFKNNLYYIKMNNMKNICLYDDYDIFNNL 6026 >ref|XP_001349553.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gb|AAC71827.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length=2295 Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 44/202 (21%) Query 114 YEIKTKLKKDQIFERDITWYDNQSINNVEIYVSNNLKNFLSFFPNKLKL----------- 162 Y+IK + +K++ + D + I N E Y N+ N+ SF+ NK K Sbjct 2013 YQIKLEEEKEKRAKID------EHIYNEERYYKNDKSNYNSFYSNKWKTMKDYNIKNLYE 2066 Query 163 TSLYNFSKYEEFKDLKNLFNYVKVMKHQNDIFIFHGKLKKHFWIHIPMKYNITKSETGD- 221 + Y +S + E D+K +FNY K K+ ++IF K+ + Y+I + G Sbjct 2067 SEFYRYSVFLENIDMKEIFNYKK--KYSSNIFDEIQSFSKNCEV-CKQYYDIYSAYYGHK 2123 Query 222 TTTLTIIPLYKYYSDYVI-----EIQFVKQNNNMKFITSIKSKENNKKNTNLYYKNIIKN 276 + + +I Y+ ++ I E+QF+ +N S E+N + +LYYK Sbjct 2124 KSGINLIKKYREGDEFTIKSKRKELQFLIRN----------SDEDNHQ--SLYYK----- 2166 Query 277 IAMYFTYDLFNGIHNNLDIFYK 298 A++ ++ + + N L I++K Sbjct 2167 -ALFLEHNNLDNLKNILQIYFK 2187 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 22, 2010 5:43 PM Number of letters in database: 7,740,688 Number of sequences in database: 15,987 Lambda K H 0.323 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 15987 Number of Hits to DB: 137441 Number of extensions: 7314 Number of successful extensions: 27 Number of sequences better than 100: 10 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 10 Length of query: 339 Length of database: 7740688 Length adjustment: 97 Effective length of query: 242 Effective length of database: 6189949 Effective search space: 1497967658 Effective search space used: 1497967658 T: 11 A: 40 X1: 16 (7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 50 (23.9 bits)