BLASTP 2.2.23+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: UMJ0UX6M01N Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 10,635,453 sequences; 3,627,481,469 total letters Query= Sel3.Plasmodium_gallinaceum.1 located on Plasmodium_gallinaceum|Pg_2265551.c000013051.Contig1|2007-01-03|ds- DNA|Plasmodium_gallinaceum_Sanger Length=334 Score E Sequences producing significant alignments: (Bits) Value emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] 263 7e-71 ref|XP_001349374.1| hypothetical protein [Plasmodium falcipar... 238 3e-63 ref|XP_001349231.1| hypothetical protein [Plasmodium falcipar... 31.2 0.54 emb|CAX64166.1| conserved Plasmodium protein, unknown functio... 31.2 0.59 ref|XP_001348521.1| conserved Plasmodium protein, unknown fun... 30.4 1.1 ref|XP_001349589.2| serine repeat antigen 2 (SERA-2) [Plasmod... 27.7 6.5 ALIGNMENTS >emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] Length=351 Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 173/349 (49%), Positives = 235/349 (67%), Gaps = 15/349 (4%) Query 1 MMLKKIYILIVIILYNITSIIVESGXSRKLHIRLPNENDDYLAKLIDIFKDICNYSVNNK 60 M+LKK+YILI++IL +I S V+SG S++LHI+LP+E+DDYLAKLI +F DIC YS+NNK Sbjct 1 MILKKVYILIILILLSILSRTVDSGUSKQLHIKLPDEDDDYLAKLIGVFNDICTYSINNK 60 Query 61 KTIKKIIIGSLLSAYSINSLYNSGVTFKKNPHYSFFIPSNKYFKNVFKIIKKNYEI---K 117 + I KI+ S +S Y+I SLYNSG+TFKKNPHYSFF+PS KY + K Sbjct 61 EKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLPSQKYILKIINNNVNIQNNDIKK 120 Query 118 MDKFTEQKIFEKYFTNVNDSKIMEMYIMNNLINFSNYLPEKIKNEKFYKFLKYREFENF- 176 +D + IFE+ FTN ++ ++ + YI+NN INF N+LP K+K E Y F KY+EF+ Sbjct 121 IDNLKDIPIFERTFTNKHNIQMSKTYILNNFINFINFLPYKLKKESLYNFSKYKEFDGLK 180 Query 177 --ENIFSHVKVLKHEQ-IFIFHGKLKKYFWLHLPLKYKILKNDND---MYTLIFIPLYKN 230 EN F+ V+VL HE I ++ K KK++W+HLP KY I+K +D Y L+FIPLYK Sbjct 181 YVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLYKY 240 Query 231 YSNYIIEIKIQK--DKSNVKFVTYIKSNENGK-KASSFYIDVIKNIAAYITYDIFDGIDN 287 YSNYII++KI + NV F + IK + + +SF+ D+IKNI+ +ITYDI + IDN Sbjct 241 YSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITYDIINAIDN 300 Query 288 NIKVLYKRNTKLSKFNFINSKRLLK--KDKFKMKFITIPFLKSLKFRIK 334 NI +LY RN K K+NFIN+ L+ +K K T+P KSL F+ K Sbjct 301 NINILYMRNVKPGKYNFINTTNALQKKTKNYKKKKFTLPSFKSLPFKFK 349 >ref|XP_001349374.1| hypothetical protein [Plasmodium falciparum 3D7] Length=331 Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 153/314 (48%), Positives = 205/314 (65%), Gaps = 15/314 (4%) Query 36 NENDDYLAKLIDIFKDICNYSVNNKKTIKKIIIGSLLSAYSINSLYNSGVTFKKNPHYSF 95 NE+DDYLAKLI +F DIC YS+NNK+ I KI+ S +S Y+I SLYNSG+TFKKNPHYSF Sbjct 16 NEDDDYLAKLIGVFNDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSF 75 Query 96 FIPSNKYFKNVFKIIKKNYEI---KMDKFTEQKIFEKYFTNVNDSKIMEMYIMNNLINFS 152 F+PS KY + K+D + IFE+ FTN ++ ++ + YI+NN INF Sbjct 76 FLPSQKYILKIINNNVNIQNNDIKKIDNLKDIPIFERTFTNKHNIQMSKTYILNNFINFI 135 Query 153 NYLPEKIKNEKFYKFLKYREFENF---ENIFSHVKVLKHEQ-IFIFHGKLKKYFWLHLPL 208 N+LP K+K E Y F KY+EF+ EN F+ V+VL HE I ++ K KK++W+HLP Sbjct 136 NFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHLPF 195 Query 209 KYKILKNDND---MYTLIFIPLYKNYSNYIIEIKIQK--DKSNVKFVTYIKSNENGK-KA 262 KY I+K +D Y L+FIPLYK YSNYII++KI + NV F + IK + + Sbjct 196 KYNIIKISDDNTTSYILMFIPLYKYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHIQN 255 Query 263 SSFYIDVIKNIAAYITYDIFDGIDNNIKVLYKRNTKLSKFNFINSKRLLK--KDKFKMKF 320 +SF+ D+IKNI+ +ITYDI + IDNNI +LY RN K K+NFIN+ L+ +K K Sbjct 256 NSFHYDIIKNISKHITYDIINAIDNNINILYMRNVKPGKYNFINTTNALQKKTKNYKKKK 315 Query 321 ITIPFLKSLKFRIK 334 T+P KSL F+ K Sbjct 316 FTLPSFKSLPFKFK 329 >ref|XP_001349231.1| hypothetical protein [Plasmodium falciparum 3D7] Length=2130 Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 0/49 (0%) Query 272 NIAAYITYDIFDGIDNNIKVLYKRNTKLSKFNFINSKRLLKKDKFKMKF 320 NI Y + DI+ +DNN +YK+ ++K + N K + K+K KM F Sbjct 72 NIKIYKSKDIYKNVDNNQNYVYKQEKIITKRKYTNPKDEIGKNKKKMTF 120 >emb|CAX64166.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length=2216 Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 0/49 (0%) Query 272 NIAAYITYDIFDGIDNNIKVLYKRNTKLSKFNFINSKRLLKKDKFKMKF 320 NI Y + DI+ +DNN +YK+ ++K + N K + K+K KM F Sbjct 72 NIKIYKSKDIYKNVDNNQNYVYKQEKIITKRKYTNPKDEIGKNKKKMTF 120 >ref|XP_001348521.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] gb|AAN36960.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length=864 Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 16/87 (18%) Query 78 NSLYNSGVTFKKNPHYSFFIPSNKYFKNVFKIIKKNYEIKMDKFTEQKIFEKYFTNVNDS 137 NSLYN G+ F YSFF+ S KN+FK K+N I+++ ++ S Sbjct 434 NSLYNDGLNF-----YSFFLNSKSTNKNLFK-KKENIHIEINNDKKKST----------S 477 Query 138 KIMEMYIMNNLINFSNYLPEKIKNEKF 164 K++ M + L + +Y + IKNE F Sbjct 478 KMLHMSQWDKLFFYEDYKTKDIKNEPF 504 >ref|XP_001349589.2| serine repeat antigen 2 (SERA-2) [Plasmodium falciparum 3D7] gb|AAC71860.3| serine repeat antigen 2 (SERA-2) [Plasmodium falciparum 3D7] Length=1105 Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 43/175 (24%) Query 92 HYSFFIPSNKYFKNVFKIIKKNYEIKMDKFTEQKIFEKYFTNVNDSKIMEMYIMNNLINF 151 Y F P+N KN++K K D ++++ +F ++N++ +E LIN+ Sbjct 408 EYDFIAPANYILKNIYK--------KNDTNGKKELL--HFKDINNNLKLE------LINY 451 Query 152 SNYLPEKIKNEKFYKFLKYREFENFENIFSHVKVL----KHEQIFIFHGKLKKYFWLHLP 207 N L K+ L Y + N ++IF+++ L K E ++ + K+K Sbjct 452 CNLL----KDNDVSGILTYEKLGNVQDIFNNLTKLLEEHKEENNYVLYHKMKNEVLC--- 504 Query 208 LKYKILKNDNDMY---TLIFIPLY--------KNYSNYIIEIKIQKDKSNVKFVT 251 LKN ND T + +P KN NYI E ++D++ + +T Sbjct 505 -----LKNANDWMKNKTGLVLPQLKYSLNKFNKNKENYIKENIFEEDENGIVDLT 554 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 22, 2010 5:43 PM Number of letters in database: 7,740,688 Number of sequences in database: 15,987 Lambda K H 0.324 0.141 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 15987 Number of Hits to DB: 122254 Number of extensions: 7228 Number of successful extensions: 24 Number of sequences better than 100: 1 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 1 Length of query: 334 Length of database: 7740688 Length adjustment: 97 Effective length of query: 237 Effective length of database: 6189949 Effective search space: 1467017913 Effective search space used: 1467017913 T: 11 A: 40 X1: 15 (7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 50 (23.9 bits)