BLASTP 2.2.23+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: UMHYNFJ5012 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 10,635,453 sequences; 3,627,481,469 total letters Query= Sel3.Plasmodium_chabaudi.2 located on gi|56525434|emb|CAAJ01001551.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1689, whole genome shotgun sequence:[translate(3)] Length=709 Score E Sequences producing significant alignments: (Bits) Value emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] 245 5e-65 ref|XP_001349374.1| hypothetical protein [Plasmodium falcipar... 222 4e-58 ALIGNMENTS >emb|CAX64123.2| Sel3 protein [Plasmodium falciparum 3D7] Length=351 Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 159/326 (48%), Positives = 211/326 (64%), Gaps = 13/326 (3%) Query 34 MVLKRVYLFVVLILFYISIPYADAGXSKTLHIKLPNEDDDYLGKLIDIFNNICTYSLNNK 93 M+LK+VY+ ++LIL I D+G SK LHIKLP+EDDDYL KLI +FN+ICTYS+NNK Sbjct 1 MILKKVYILIILILLSILSRTVDSGUSKQLHIKLPDEDDDYLAKLIGVFNDICTYSINNK 60 Query 94 KKIAKIITTSLISGYALNSLYNSGVTFKKDPHYSLFFPSSEYIKNVFNKSKKNYEIKTK- 152 +KIAKI++TS +S Y + SLYNSG+TFKK+PHYS F PS +YI + N + K Sbjct 61 EKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLPSQKYILKIINNNVNIQNNDIKK 120 Query 153 ---LKKDQIFERDIICYDNQSISSVEMYISNNFKNFLNFFPDKLKMTSLYNFSKYEEFKD 209 LK IFER + +I + YI NNF NF+NF P KLK SLYNFSKY+EF Sbjct 121 IDNLKDIPIFERTFT--NKHNIQMSKTYILNNFINFINFLPYKLKKESLYNFSKYKEFDG 178 Query 210 FK---NLFNYVKVMKYQNDIFIFHGKLKKHFWIHIPMKYNITKSETGDITT--LTIIPLY 264 K N F V+V+ ++++I ++ K KKH+WIH+P KYNI K + T+ L IPLY Sbjct 179 LKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLY 238 Query 265 KYYSDYIIEIQFVKQNN--NMKFITSIKSNENNQKNTNLYYKNIIKNIAMYFTYDLYNGM 322 KYYS+YII+++ NN N+ F + IK + N ++ +IIKNI+ + TYD+ N + Sbjct 239 KYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITYDIINAI 298 Query 323 HNNLEIFYKRGVKLNKINFIRPHNLL 348 NN+ I Y R VK K NFI N L Sbjct 299 DNNINILYMRNVKPGKYNFINTTNAL 324 Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 159/326 (48%), Positives = 211/326 (64%), Gaps = 13/326 (3%) Query 372 MVLKRVYLFVVLILFYISIPYADAGXSKTLHIKLPNEDDDYLGKLIDIFNNICTYSLNNK 431 M+LK+VY+ ++LIL I D+G SK LHIKLP+EDDDYL KLI +FN+ICTYS+NNK Sbjct 1 MILKKVYILIILILLSILSRTVDSGUSKQLHIKLPDEDDDYLAKLIGVFNDICTYSINNK 60 Query 432 KKIAKIITTSLISGYALNSLYNSGVTFKKDPHYSLFFPSSEYIKNVFNKSKKNYEIKTK- 490 +KIAKI++TS +S Y + SLYNSG+TFKK+PHYS F PS +YI + N + K Sbjct 61 EKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLPSQKYILKIINNNVNIQNNDIKK 120 Query 491 ---LKKDQIFERDIICYDNQSISSVEMYISNNFKNFLNFFPDKLKMTSLYNFSKYEEFKD 547 LK IFER + +I + YI NNF NF+NF P KLK SLYNFSKY+EF Sbjct 121 IDNLKDIPIFERTFT--NKHNIQMSKTYILNNFINFINFLPYKLKKESLYNFSKYKEFDG 178 Query 548 FK---NLFNYVKVMKYQNDIFIFHGKLKKHFWIHIPMKYNITKSETGDITT--LTIIPLY 602 K N F V+V+ ++++I ++ K KKH+WIH+P KYNI K + T+ L IPLY Sbjct 179 LKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLY 238 Query 603 KYYSDYIIEIQFVKQNN--NMKFITSIKSNENNQKNTNLYYKNIIKNIAMYFTYDLYNGM 660 KYYS+YII+++ NN N+ F + IK + N ++ +IIKNI+ + TYD+ N + Sbjct 239 KYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITYDIINAI 298 Query 661 HNNLEIFYKRGVKLNKINFIRPHNLL 686 NN+ I Y R VK K NFI N L Sbjct 299 DNNINILYMRNVKPGKYNFINTTNAL 324 >ref|XP_001349374.1| hypothetical protein [Plasmodium falciparum 3D7] Length=331 Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/291 (48%), Positives = 186/291 (63%), Gaps = 13/291 (4%) Query 69 NEDDDYLGKLIDIFNNICTYSLNNKKKIAKIITTSLISGYALNSLYNSGVTFKKDPHYSL 128 NEDDDYL KLI +FN+ICTYS+NNK+KIAKI++TS +S Y + SLYNSG+TFKK+PHYS Sbjct 16 NEDDDYLAKLIGVFNDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSF 75 Query 129 FFPSSEYIKNVFNKSKKNYEIKTK----LKKDQIFERDIICYDNQSISSVEMYISNNFKN 184 F PS +YI + N + K LK IFER + +I + YI NNF N Sbjct 76 FLPSQKYILKIINNNVNIQNNDIKKIDNLKDIPIFERTFT--NKHNIQMSKTYILNNFIN 133 Query 185 FLNFFPDKLKMTSLYNFSKYEEFKDFK---NLFNYVKVMKYQNDIFIFHGKLKKHFWIHI 241 F+NF P KLK SLYNFSKY+EF K N F V+V+ ++++I ++ K KKH+WIH+ Sbjct 134 FINFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHL 193 Query 242 PMKYNITKSETGDITT--LTIIPLYKYYSDYIIEIQFVKQNN--NMKFITSIKSNENNQK 297 P KYNI K + T+ L IPLYKYYS+YII+++ NN N+ F + IK + Sbjct 194 PFKYNIIKISDDNTTSYILMFIPLYKYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHI 253 Query 298 NTNLYYKNIIKNIAMYFTYDLYNGMHNNLEIFYKRGVKLNKINFIRPHNLL 348 N ++ +IIKNI+ + TYD+ N + NN+ I Y R VK K NFI N L Sbjct 254 QNNSFHYDIIKNISKHITYDIINAIDNNINILYMRNVKPGKYNFINTTNAL 304 Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/291 (48%), Positives = 186/291 (63%), Gaps = 13/291 (4%) Query 407 NEDDDYLGKLIDIFNNICTYSLNNKKKIAKIITTSLISGYALNSLYNSGVTFKKDPHYSL 466 NEDDDYL KLI +FN+ICTYS+NNK+KIAKI++TS +S Y + SLYNSG+TFKK+PHYS Sbjct 16 NEDDDYLAKLIGVFNDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSF 75 Query 467 FFPSSEYIKNVFNKSKKNYEIKTK----LKKDQIFERDIICYDNQSISSVEMYISNNFKN 522 F PS +YI + N + K LK IFER + +I + YI NNF N Sbjct 76 FLPSQKYILKIINNNVNIQNNDIKKIDNLKDIPIFERTFT--NKHNIQMSKTYILNNFIN 133 Query 523 FLNFFPDKLKMTSLYNFSKYEEFKDFK---NLFNYVKVMKYQNDIFIFHGKLKKHFWIHI 579 F+NF P KLK SLYNFSKY+EF K N F V+V+ ++++I ++ K KKH+WIH+ Sbjct 134 FINFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNHEDNIIVYQAKTKKHYWIHL 193 Query 580 PMKYNITKSETGDITT--LTIIPLYKYYSDYIIEIQFVKQNN--NMKFITSIKSNENNQK 635 P KYNI K + T+ L IPLYKYYS+YII+++ NN N+ F + IK + Sbjct 194 PFKYNIIKISDDNTTSYILMFIPLYKYYSNYIIQMKITSNNNNQNVTFSSCIKQEKTEHI 253 Query 636 NTNLYYKNIIKNIAMYFTYDLYNGMHNNLEIFYKRGVKLNKINFIRPHNLL 686 N ++ +IIKNI+ + TYD+ N + NN+ I Y R VK K NFI N L Sbjct 254 QNNSFHYDIIKNISKHITYDIINAIDNNINILYMRNVKPGKYNFINTTNAL 304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 22, 2010 5:43 PM Number of letters in database: 7,740,688 Number of sequences in database: 15,987 Lambda K H 0.322 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 15987 Number of Hits to DB: 615487 Number of extensions: 45148 Number of successful extensions: 1360 Number of sequences better than 100: 42 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 1041 Number of HSP's successfully gapped: 188 Length of query: 709 Length of database: 7740688 Length adjustment: 104 Effective length of query: 605 Effective length of database: 6078040 Effective search space: 3677214200 Effective search space used: 3677214200 T: 11 A: 40 X1: 16 (7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 54 (25.4 bits)