BLASTP 2.2.23+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: UMJX1J04016 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 10,635,453 sequences; 3,627,481,469 total letters Query= Sel15 per traduir:[translate(1)] Length=123 Score E Sequences producing significant alignments: (Bits) Value ref|NP_500152.1| hypothetical protein Y76B12C.3 [Caenorhabdit... 64.3 2e-11 ref|NP_491681.1| Germ-Line Helicase family member (glh-3) [Ca... 28.9 0.77 ref|NP_496476.1| hypothetical protein F54D5.14 [Caenorhabditi... 27.3 2.0 ref|NP_508919.2| hypothetical protein C03F11.3 [Caenorhabditi... 26.9 2.7 ref|NP_001023524.1| hypothetical protein Y57G11C.40 [Caenorha... 26.9 2.8 ref|NP_493664.2| hypothetical protein K10B4.3 [Caenorhabditis... 26.2 4.5 ref|NP_510625.2| hypothetical protein T27A8.1 [Caenorhabditis... 25.4 7.7 ref|NP_491573.1| hypothetical protein F55A12.5 [Caenorhabditi... 25.4 8.5 ref|NP_504246.1| hypothetical protein F54D11.4 [Caenorhabditi... 25.4 8.8 ALIGNMENTS >ref|NP_500152.1| hypothetical protein Y76B12C.3 [Caenorhabditis elegans] gb|AAF36064.2| Hypothetical protein Y76B12C.3 [Caenorhabditis elegans] Length=152 Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 71/127 (55%), Gaps = 6/127 (4%) Query 1 ERCRSLGFGP-SLLCTSCTKLGEHVGKDSTLVEECAGCCTDEAQ-RASHFAKAVLDVCKX 58 E C++ GF P +L C C +L ++ TL+ +C CC E + + + A+L+VC+ Sbjct 27 EECKAAGFNPETLKCGLCERLSDY--HLETLLTDCLQCCIKEEEFKHEKYPTAILEVCEC 84 Query 59 RLGHYPALSEFI-EERAGKFP-NLSVTYTQGAPPTLYMQDADGRTVDELSVGGWKTEYID 116 L +P + F+ ++ A +F + V + +G P + ++DAD +T + LSV W T+ + Sbjct 85 NLARFPQVQAFVHKDMARQFGGKVKVKHVRGVRPQVALKDADFKTKEVLSVEKWDTDTLI 144 Query 117 EYLHEKL 123 ++ ++ L Sbjct 145 DFFNQWL 151 >ref|NP_491681.1| Germ-Line Helicase family member (glh-3) [Caenorhabditis elegans] sp|O01836.1|GLH3_CAEEL RecName: Full=ATP-dependent RNA helicase glh-3; AltName: Full=Germline helicase 3 gb|AAB57719.1| Germ-line helicase protein 3 [Caenorhabditis elegans] gb|AAC28388.1| germline RNA helicase-3 [Caenorhabditis elegans] Length=720 Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query 7 GFGPSLLCTSCTKLGEHVGKDSTLVEECAGCCTDEAQRASHFA 49 GFG S C +C K G + S ECA C D RA+ A Sbjct 197 GFGISNTCFNCKKYGHRATECSAPQRECAN-CGDPNHRANECA 238 >ref|NP_496476.1| hypothetical protein F54D5.14 [Caenorhabditis elegans] emb|CAB16920.1| C. elegans protein F54D5.14, partially confirmed by transcript evidence [Caenorhabditis elegans] Length=1130 Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query 24 VGKDSTLVEECAGCCTDEAQRASHFAKAVLDVC-------KXRLGHYPALSEFIEERA-G 75 VG D+T+ EC D+ +R + + + DV R+ YP+L +F E + Sbjct 898 VGCDTTITLECVKDFKDKLKRLKYLCRMIEDVLIELKNLHAARVKAYPSLKKFTELKVCN 957 Query 76 KFPNL 80 KF L Sbjct 958 KFQEL 962 >ref|NP_508919.2| hypothetical protein C03F11.3 [Caenorhabditis elegans] sp|Q11124.2|YX13_CAEEL RecName: Full=Uncharacterized protein C03F11.3 gb|AAK18884.2| Hypothetical protein C03F11.3 [Caenorhabditis elegans] Length=563 Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 0/23 (0%) Query 101 TVDELSVGGWKTEYIDEYLHEKL 123 TVD+L G+KT +++++L E L Sbjct 218 TVDQLLFSGYKTPFVEKFLDEAL 240 >ref|NP_001023524.1| hypothetical protein Y57G11C.40 [Caenorhabditis elegans] emb|CAE18023.1| C. elegans protein Y57G11C.40, confirmed by transcript evidence [Caenorhabditis elegans] Length=181 Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Query 16 SCTKLGEHVGKDSTLVEECAG----CCTDEAQRASHFAKAVLDVCKXRLGHYPALSEF 69 SC+ E V T +EE C ++ ++ F+ ++++C ++ H A S+F Sbjct 121 SCSSYSEFV----TCIEENLAKQPSCTQEDVEKFKTFSNLIIEICNLKMDHIKAFSDF 174 >ref|NP_493664.2| hypothetical protein K10B4.3 [Caenorhabditis elegans] sp|O17237.3|MELT_CAEEL RecName: Full=Protein melted homolog gb|AAB71008.3| Hypothetical protein K10B4.3 [Caenorhabditis elegans] Length=871 Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query 14 CTSCTKLGEHVGKDS---TLVEECAGCCTDEAQRASHF 48 C++ T+ GE VGKDS +E C C ++ F Sbjct 660 CSAITQFGEVVGKDSQQYQTLEHCWKCLPSSITKSVPF 697 >ref|NP_510625.2| hypothetical protein T27A8.1 [Caenorhabditis elegans] emb|CAA92226.2| C. elegans protein T27A8.1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length=492 Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query 62 HYPALSEFIEERAGKFPNLSVTYTQGAPPTLYMQDADGRTVDELSVGGWKTEY 114 +Y L++ I KFPNL+ Y+ G Q GR + L V + E+ Sbjct 60 NYSTLTDHIHNLHRKFPNLTHIYSAG-------QSVQGRELWVLVVSRYPIEH 105 >ref|NP_491573.1| hypothetical protein F55A12.5 [Caenorhabditis elegans] gb|AAB54123.1| Hypothetical protein F55A12.5 [Caenorhabditis elegans] Length=849 Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query 15 TSCTKLGEHVGKDSTLVEECAGCCTDEAQRAS 46 ++ +KL + V DS ++C GC +DE Q A+ Sbjct 800 SAVSKLEKSVDHDS---KKCLGCQSDEVQEAA 828 >ref|NP_504246.1| hypothetical protein F54D11.4 [Caenorhabditis elegans] gb|AAL06027.1|U64834_4 Hypothetical protein F54D11.4 [Caenorhabditis elegans] Length=192 Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 0/28 (0%) Query 66 LSEFIEERAGKFPNLSVTYTQGAPPTLY 93 +++ I E +G PN+S + + APP + Sbjct 165 VNQIITELSGTLPNISDSSSAAAPPVMV 192 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 22, 2010 5:43 PM Number of letters in database: 12,867,993 Number of sequences in database: 28,653 Lambda K H 0.322 0.138 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 28653 Number of Hits to DB: 1511172 Number of extensions: 55893 Number of successful extensions: 105 Number of sequences better than 100: 44 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 44 Length of query: 123 Length of database: 12867993 Length adjustment: 87 Effective length of query: 36 Effective length of database: 10375182 Effective search space: 373506552 Effective search space used: 373506552 T: 11 A: 40 X1: 16 (7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 45 (21.9 bits)