BLASTP 2.2.23+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: UMJWH1MG013 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 10,635,453 sequences; 3,627,481,469 total letters Query= Aureococcus anophagefferens Length=108 Score E Sequences producing significant alignments: (Bits) Value ref|NP_500152.1| hypothetical protein Y76B12C.3 [Caenorhabdit... 215 5e-57 pir||T15803 hypothetical protein C44B7.10 - Caenorhabditis el... 27.7 1.3 ref|NP_001022563.1| Suppressor/Enhancer of Lin-12 family memb... 27.3 1.9 ref|NP_001023801.1| Serpentine Receptor, class Z family membe... 26.9 2.2 ref|NP_001022562.1| Suppressor/Enhancer of Lin-12 family memb... 26.9 2.2 ref|NP_510121.2| Nuclear Hormone Receptor family member (nhr-... 26.9 2.5 ref|NP_505267.1| Regulator of Presynaptic Morphology family m... 25.8 4.9 ref|NP_871955.2| hypothetical protein C44B7.12 [Caenorhabditi... 25.4 6.8 ref|NP_500240.1| hypothetical protein Y69A2AR.31 [Caenorhabdi... 25.0 9.4 ALIGNMENTS >ref|NP_500152.1| hypothetical protein Y76B12C.3 [Caenorhabditis elegans] gb|AAF36064.2| Hypothetical protein Y76B12C.3 [Caenorhabditis elegans] Length=152 Score = 215 bits (547), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 108/121 (89%), Positives = 108/121 (89%), Gaps = 13/121 (10%) Query 1 ECKAAGFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA 60 ECKAAGFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA Sbjct 28 ECKAAGFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLA 87 Query 61 RFPQVQAFVHKDMARQF-------------PQVALKDADFKTKEVLSVEKWDTDTLIDFF 107 RFPQVQAFVHKDMARQF PQVALKDADFKTKEVLSVEKWDTDTLIDFF Sbjct 88 RFPQVQAFVHKDMARQFGGKVKVKHVRGVRPQVALKDADFKTKEVLSVEKWDTDTLIDFF 147 Query 108 N 108 N Sbjct 148 N 148 >pir||T15803 hypothetical protein C44B7.10 - Caenorhabditis elegans Length=818 Score = 27.7 bits (60), Expect = 1.3, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query 9 PETLKCGLCERLSDYHLETLLTDCLQCCIKEEEF-KHEKYPTAILEVCECNLARFPQVQA 67 PE ++ + + + ++ + + L+ KE +F +E Y +E E FP+++ Sbjct 120 PEAIRIAIRQTIKEFEEDNCVYLELRTSPKETDFMTYEDYLQVCIESFEAAKHEFPRIKT 179 Query 68 FVHKDMARQFP 78 F+ + R+ P Sbjct 180 FLIVSLDRRMP 190 >ref|NP_001022563.1| Suppressor/Enhancer of Lin-12 family member (sel-5) [Caenorhabditis elegans] gb|AAF71546.1|AF256467_1 SEL-5B serine/threonine kinase [Caenorhabditis elegans] emb|CAA86332.1| C. elegans protein F35G12.3b, confirmed by transcript evidence [Caenorhabditis elegans] Length=690 Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 8/93 (8%) Query 17 CERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHKDM--- 73 C L++YH + +L + + + +++ + ++CE + Q +H+D+ Sbjct 123 CMLLTEYHQKNVLQLMNERISQNQYLTNDEILSIFTDLCEAVSFIHNRPQPIIHRDLKVE 182 Query 74 -----ARQFPQVALKDADFKTKEVLSVEKWDTD 101 + + P L D T ++LSVEK+ + Sbjct 183 NVLISSHKPPHYVLCDFGSATTQILSVEKYGVE 215 >ref|NP_001023801.1| Serpentine Receptor, class Z family member (srz-102) [Caenorhabditis elegans] emb|CAH60765.1| Hypothetical protein F14F8.13 [Caenorhabditis elegans] Length=328 Score = 26.9 bits (58), Expect = 2.2, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 0/45 (0%) Query 62 FPQVQAFVHKDMARQFPQVALKDADFKTKEVLSVEKWDTDTLIDF 106 F +Q+ VHK + + LKDA F T VLS+ K+ + + +F Sbjct 141 FLNIQSSVHKYLPHFTLCIILKDAVFGTACVLSLAKYLNEEVSEF 185 >ref|NP_001022562.1| Suppressor/Enhancer of Lin-12 family member (sel-5) [Caenorhabditis elegans] gb|AAF71545.1|AF256466_1 SEL-5A serine/threonine kinase [Caenorhabditis elegans] emb|CAA86326.1| C. elegans protein F35G12.3a, confirmed by transcript evidence [Caenorhabditis elegans] Length=1077 Score = 26.9 bits (58), Expect = 2.2, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 8/93 (8%) Query 17 CERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHKDM--- 73 C L++YH + +L + + + +++ + ++CE + Q +H+D+ Sbjct 123 CMLLTEYHQKNVLQLMNERISQNQYLTNDEILSIFTDLCEAVSFIHNRPQPIIHRDLKVE 182 Query 74 -----ARQFPQVALKDADFKTKEVLSVEKWDTD 101 + + P L D T ++LSVEK+ + Sbjct 183 NVLISSHKPPHYVLCDFGSATTQILSVEKYGVE 215 >ref|NP_510121.2| Nuclear Hormone Receptor family member (nhr-214) [Caenorhabditis elegans] emb|CAA90297.2| C. elegans protein T07C5.3a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length=316 Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 20/104 (19%) Query 23 YHLETLLTDCLQCCIKEEEFKH-----EKYPTAILEVCEC-----NLARFPQVQAFVHKD 72 Y LE +LT ++C +E+ H + +P ++ E + NL R V F+ Sbjct 155 YFLEAMLTMAMRCYFCKEDLMHFPHGVDLFPVSVQEAGKIKLNFLNLIRCQLVGKFIELK 214 Query 73 MARQ---------FPQVALKDADFKTKEVLS-VEKWDTDTLIDF 106 + R+ F A+ D F + +LS +K T +L+ + Sbjct 215 ITREEIIMISAIAFSNPAVPDLSFTGQNLLSCYQKLYTSSLLQY 258 >ref|NP_505267.1| Regulator of Presynaptic Morphology family member (rpm-1) [Caenorhabditis elegans] sp|Q17551.1|RPM1_CAEEL RecName: Full=E3 ubiquitin-protein ligase rpm-1; AltName: Full=Pam/highwire/rpm-1 protein; AltName: Full=Regulator of presynaptic morphology protein 1; AltName: Full=Synapse defective protein 3 gb|AAA96117.1| Regulator of presynaptic morphology protein 1 [Caenorhabditis elegans] Length=3766 Score = 25.8 bits (55), Expect = 4.9, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 10/45 (22%) Query 2 CKAA----GFNPETLKCGLCERLSD------YHLETLLTDCLQCC 36 C+AA FNPE L CG C S + +E L C CC Sbjct 3647 CQAALDSSQFNPEELLCGGCSDTSGVQVCPRHGVEYLEYKCRFCC 3691 >ref|NP_871955.2| hypothetical protein C44B7.12 [Caenorhabditis elegans] sp|Q8IG39.2|ADAL_CAEEL RecName: Full=Adenosine deaminase-like protein gb|AAN63432.2| Hypothetical protein C44B7.12 [Caenorhabditis elegans] Length=388 Score = 25.4 bits (54), Expect = 6.8, Method: Compositional matrix adjust. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query 9 PETLKCGLCERLSDYHLETLLTDCLQCCIKEEEF-KHEKYPTAILEVCECNLARFPQVQA 67 PE ++ + + + ++ + + L+ KE +F +E Y +E E FP+++ Sbjct 120 PEAIRIAIRQTIKEFEEDNCVYLELRTSPKETDFMTYEDYLQVCIESFEAAKHEFPRIKT 179 Query 68 FVHKDMARQFP 78 F+ + R+ P Sbjct 180 FLIVSLDRRMP 190 >ref|NP_500240.1| hypothetical protein Y69A2AR.31 [Caenorhabditis elegans] gb|AAK68577.1|AC084158_25 Hypothetical protein Y69A2AR.31 [Caenorhabditis elegans] Length=1219 Score = 25.0 bits (53), Expect = 9.4, Method: Compositional matrix adjust. Identities = 7/24 (29%), Positives = 17/24 (70%), Gaps = 0/24 (0%) Query 62 FPQVQAFVHKDMARQFPQVALKDA 85 + Q+Q F+H+ + +FP V+++ + Sbjct 28 YSQIQGFLHQKFSLRFPLVSIESS 51 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Mar 22, 2010 5:43 PM Number of letters in database: 12,867,993 Number of sequences in database: 28,653 Lambda K H 0.324 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 28653 Number of Hits to DB: 517719 Number of extensions: 19352 Number of successful extensions: 57 Number of sequences better than 100: 14 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 14 Length of query: 108 Length of database: 12867993 Length adjustment: 78 Effective length of query: 30 Effective length of database: 10633059 Effective search space: 318991770 Effective search space used: 318991770 T: 11 A: 40 X1: 15 (7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.0 bits) S2: 45 (21.9 bits)